BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0013.p
         (76 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_693456.1| hypothetical protein OB2535 [Oceanobacillus ihe...    67   1e-10
ref|NP_832119.1| Cold shock protein [Bacillus cereus ATCC 14579]...    64   2e-09
ref|NP_844798.1| conserved hypothetical protein [Bacillus anthra...    63   3e-09
ref|NP_388508.1| ydjO [Bacillus subtilis] >gi|7474977|pir||C6979...    56   3e-07

>ref|NP_693456.1| hypothetical protein OB2535 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14491.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 61

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 42/59 (71%)

Query: 1  MNYRKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQL 59
          M++ + P E V E  T +W+CT+  C GWMR++F+FE  P+C LC S ME+ ++++P++
Sbjct: 1  MSFSRGPKEPVQEVETNVWSCTSGDCQGWMRESFSFEEEPTCPLCDSSMEKEVRVIPEM 59


>ref|NP_832119.1| Cold shock protein [Bacillus cereus ATCC 14579]
 gb|AAP09320.1| Cold shock protein [Bacillus cereus ATCC 14579]
          Length = 61

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 4  RKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQL 59
          RK  + EVP E T +W C ++ C GWMR NF+FE  P C LC S M+   ++LP+L
Sbjct: 5  RKNDVAEVPPEQTPVWECESEDCLGWMRKNFSFEEEPKCPLCKSSMKSGERLLPKL 60


>ref|NP_844798.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 ref|NP_978762.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP26284.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAS41370.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 61

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 35/56 (62%)

Query: 4  RKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQL 59
          RK  + EVP E T +W C  + C GWMR NF+FE  P C LC S M+   ++LP+L
Sbjct: 5  RKNDVAEVPPEQTPVWECEAEDCLGWMRKNFSFEEEPKCPLCKSSMKSGERLLPKL 60


>ref|NP_388508.1| ydjO [Bacillus subtilis]
 pir||C69790 hypothetical protein ydjO - Bacillus subtilis
 dbj|BAA22771.1| function unknown [Bacillus subtilis]
 emb|CAB12446.1| ydjO [Bacillus subtilis subsp. subtilis str. 168]
          Length = 69

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 3  YRKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQLLN 61
          Y K+  E +P+E+ + W CT + CNGW R NFA    P C LC S M   ++ L  L N
Sbjct: 4  YNKRNQEPLPKEDVSTWECTKEDCNGWTRKNFASSDTPLCPLCGSKMVDGIRSLVNLQN 62


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 123,259,691
Number of extensions: 4141929
Number of successful extensions: 7795
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7795
Number of HSP's successfully gapped: 4
Length of query: 76
Length of database: 757,237,578
Length adjustment: 46
Effective length of query: 30
Effective length of database: 632,343,024
Effective search space: 18970290720
Effective search space used: 18970290720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)