BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0028.p (367 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183780.1| hypothetical protein Exigu077501 [Exiguobacte... 370 e-101 ref|NP_832450.1| Outer membrane protein romA [Bacillus cereus AT... 370 e-101 ref|NP_656567.1| lactamase_B, Metallo-beta-lactamase superfamily... 365 e-100 ref|NP_979028.1| conserved hypothetical protein [Bacillus cereus... 363 4e-99 ref|NP_242955.1| BH2089~unknown conserved protein in others [Bac... 353 5e-96 >ref|ZP_00183780.1| hypothetical protein Exigu077501 [Exiguobacterium sp. 255-15] Length = 361 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/348 (53%), Positives = 240/348 (68%), Gaps = 9/348 (2%) Query: 21 MTFYPAFGRRASRKEKQIISRSLNYKDGKFVYPAATVMMENSAGSSLSILKDFIKGNPRS 80 MT YP FGRR S+ ++Q +RS + +GKF ++ + SILKD+ + P Sbjct: 19 MTRYPLFGRRPSKADQQQYTRSRQFSNGKF-QNELPFQLKMEWETMKSILKDYGRALPSL 77 Query: 81 RPPQPLIPEKLLPGSIQESG-DTRVTWFGHSAVLLEMDGVTLFLDPMLGRSPSPFPFVGG 139 +P +PL ++P + G + RVTWFGHSA LLE+D T+F DPMLGR+PSPFP +GG Sbjct: 78 KPVKPL---PVVPFERRTDGTEPRVTWFGHSAFLLELDHQTIFFDPMLGRAPSPFPKLGG 134 Query: 140 RRYSKQLPIEISELPRIDAVLLSHDHYDHLDYGSIRQLKDKVGMFIVPLGVGAHLQRWGV 199 R+ +++ LP ID V+ SHDHYDHLDY S+ LKD+VG FIVPLG+ + L+ WGV Sbjct: 135 GRFQTTSQVDLDALPPIDLVIYSHDHYDHLDYHSVLALKDRVGQFIVPLGIASRLKGWGV 194 Query: 200 SREKIREKDWWDEFRYAGLTLTSAPARHFSGRSLLDRNSTLWCSWIIRGAETKIFFSGDS 259 +I E DW + F GL LT+ PARH+SGR+ LD+ STLW SW+I G++ KIFFSGDS Sbjct: 195 DPARITELDWHESFETNGLRLTATPARHYSGRNGLDQFSTLWASWVIEGSK-KIFFSGDS 253 Query: 260 GYGPHFAEIGEKYGPFDLTLMECGQYDPRWADIHMLPEQTVQAHLDVRGALMIPIHWAAF 319 GYGPHF IGE+YGPFDLT+MECGQYD RW+ HMLPEQT+ AHLDV+G +MIP+HW+AF Sbjct: 254 GYGPHFKAIGEQYGPFDLTIMECGQYDTRWSSSHMLPEQTLAAHLDVKGDVMIPVHWSAF 313 Query: 320 TLSMHDWTDPVERVFAAAKAHGVRLATPRIGEPVYTGSAEVPSLAWWK 367 TL+ H W +PVERV A H V + TP IGE V +A + WW+ Sbjct: 314 TLAFHPWFEPVERVLKEAAKHDVPVVTPMIGESV---TATSQTRKWWR 358 >ref|NP_832450.1| Outer membrane protein romA [Bacillus cereus ATCC 14579] gb|AAP09651.1| Outer membrane protein romA [Bacillus cereus ATCC 14579] Length = 320 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 170/301 (56%), Positives = 217/301 (72%), Gaps = 3/301 (0%) Query: 67 LSILKDFIKGNPRSRPPQPLIPEKLLPGSIQESGDTRVTWFGHSAVLLEMDGVTLFLDPM 126 +S++ D+ K + RP + L +L ES ++ VTWFGHSA LL+++G L LDPM Sbjct: 21 ISLMTDYFKIKSKLRPIKDL--PIVLSNKDNESLES-VTWFGHSASLLKIEGKKLLLDPM 77 Query: 127 LGRSPSPFPFVGGRRYSKQLPIEISELPRIDAVLLSHDHYDHLDYGSIRQLKDKVGMFIV 186 G + SPFP +RYS +E +L IDA+++SH+HYDHL+Y SI QLKD+ F V Sbjct: 78 FGDASSPFPLFNSKRYSGTFSLERDDLQEIDAIIISHNHYDHLNYKSIMQLKDRAKHFYV 137 Query: 187 PLGVGAHLQRWGVSREKIREKDWWDEFRYAGLTLTSAPARHFSGRSLLDRNSTLWCSWII 246 P GV +L +WGVS KI E +WWDE + + L APARHFSGR + DR+ +LWCSW+I Sbjct: 138 PTGVAQYLIKWGVSPSKISEHNWWDEITFDNIKLVCAPARHFSGRGMTDRDRSLWCSWLI 197 Query: 247 RGAETKIFFSGDSGYGPHFAEIGEKYGPFDLTLMECGQYDPRWADIHMLPEQTVQAHLDV 306 G ETKIFFSGDSGY PHF EIG+KYGPFDLTLMECGQYDPRW+ IHMLPE+TVQAH+DV Sbjct: 198 LGQETKIFFSGDSGYTPHFKEIGDKYGPFDLTLMECGQYDPRWSAIHMLPEETVQAHIDV 257 Query: 307 RGALMIPIHWAAFTLSMHDWTDPVERVFAAAKAHGVRLATPRIGEPVYTGSAEVPSLAWW 366 +G L++PIHW AFTL++H+W+DP+ERV A GV++ TP+IGE + S PS AWW Sbjct: 258 KGELLLPIHWGAFTLALHEWSDPIERVTKEANRLGVKITTPQIGESITLKSTNYPSSAWW 317 Query: 367 K 367 K Sbjct: 318 K 318 >ref|NP_656567.1| lactamase_B, Metallo-beta-lactamase superfamily [Bacillus anthracis A2012] ref|NP_845045.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26531.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 320 Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust. Identities = 164/301 (54%), Positives = 216/301 (71%), Gaps = 3/301 (0%) Query: 67 LSILKDFIKGNPRSRPPQPLIPEKLLPGSIQESGDTRVTWFGHSAVLLEMDGVTLFLDPM 126 + ++ D++K + RP + L +L ES ++ +TWFGHSA LL+++G L LDPM Sbjct: 21 IGLMTDYLKTKTKLRPIKNL--PIVLSNKDNESLES-LTWFGHSASLLKIEGKKLLLDPM 77 Query: 127 LGRSPSPFPFVGGRRYSKQLPIEISELPRIDAVLLSHDHYDHLDYGSIRQLKDKVGMFIV 186 G + SPFP +RYS +E +L IDA+++SH+HYDHL+Y SI QLKD+ F V Sbjct: 78 FGDTSSPFPLFNSKRYSGTFSLEREDLQEIDAIIISHNHYDHLNYKSIMQLKDRTKHFYV 137 Query: 187 PLGVGAHLQRWGVSREKIREKDWWDEFRYAGLTLTSAPARHFSGRSLLDRNSTLWCSWII 246 P GV +L +WG+S KI E +WWDE + + L PARHFSGR + DR+ +LWCSW+I Sbjct: 138 PTGVAQYLIKWGISPSKISEHNWWDEIAFDNIKLVCTPARHFSGRGMTDRDCSLWCSWLI 197 Query: 247 RGAETKIFFSGDSGYGPHFAEIGEKYGPFDLTLMECGQYDPRWADIHMLPEQTVQAHLDV 306 G ETKIFFSGDSGY PHF EIG+KYGPFDLTLMECGQYDPRW+ IHMLPE+TVQAH+DV Sbjct: 198 LGQETKIFFSGDSGYAPHFKEIGDKYGPFDLTLMECGQYDPRWSAIHMLPEETVQAHIDV 257 Query: 307 RGALMIPIHWAAFTLSMHDWTDPVERVFAAAKAHGVRLATPRIGEPVYTGSAEVPSLAWW 366 +G L++PIHW AFTL++H+W+DP+ERV A GV++ TP+IGE + S + P AWW Sbjct: 258 KGELLLPIHWGAFTLALHEWSDPIERVTKEANRLGVKITTPQIGESITLKSTDYPRYAWW 317 Query: 367 K 367 + Sbjct: 318 Q 318 >ref|NP_979028.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41636.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 320 Score = 363 bits (931), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 164/301 (54%), Positives = 210/301 (69%), Gaps = 3/301 (0%) Query: 67 LSILKDFIKGNPRSRPPQPLIPEKLLPGSIQESGDTRVTWFGHSAVLLEMDGVTLFLDPM 126 + ++ D+ K + RP + L ++ +TWFGHSA LL+++G TL LDPM Sbjct: 21 IGLMTDYFKMKTKLRPIKNL---PIVLSDKNNKSLESITWFGHSASLLKIEGKTLLLDPM 77 Query: 127 LGRSPSPFPFVGGRRYSKQLPIEISELPRIDAVLLSHDHYDHLDYGSIRQLKDKVGMFIV 186 G + SPFP +RYS +E EL DA+++SH+HYDHL+Y SI QLKD+V F V Sbjct: 78 FGDASSPFPVFNSKRYSGSFSLEREELQEXDAIIISHNHYDHLNYKSIMQLKDRVKHFYV 137 Query: 187 PLGVGAHLQRWGVSREKIREKDWWDEFRYAGLTLTSAPARHFSGRSLLDRNSTLWCSWII 246 P GV +L +WGVS KI E +WWDE + L APARHFSGR + DR+ +LWCSW I Sbjct: 138 PTGVTQYLIKWGVSPSKISEHNWWDEIMLDTIKLVCAPARHFSGRGMTDRDCSLWCSWAI 197 Query: 247 RGAETKIFFSGDSGYGPHFAEIGEKYGPFDLTLMECGQYDPRWADIHMLPEQTVQAHLDV 306 G ETK+FFSGDSGY PHF EIG KYGPFDLTLMECGQYDPRW+ IHMLPE+TVQAH+DV Sbjct: 198 LGQETKVFFSGDSGYAPHFKEIGNKYGPFDLTLMECGQYDPRWSAIHMLPEETVQAHIDV 257 Query: 307 RGALMIPIHWAAFTLSMHDWTDPVERVFAAAKAHGVRLATPRIGEPVYTGSAEVPSLAWW 366 +G L++PIHW AFTL++H+W+DP+ERV A GV++ TP+IGE + S + P AWW Sbjct: 258 KGELLLPIHWGAFTLALHEWSDPIERVTKEANRLGVKITTPQIGESITLKSTDYPRYAWW 317 Query: 367 K 367 + Sbjct: 318 Q 318 >ref|NP_242955.1| BH2089~unknown conserved protein in others [Bacillus halodurans] pir||A83911 hypothetical protein BH2089 [imported] - Bacillus halodurans (strain C-125) dbj|BAA75368.1| unknown [Bacillus halodurans] dbj|BAB05808.1| BH2089~unknown conserved protein in others [Bacillus halodurans] Length = 370 Score = 353 bits (905), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 174/348 (50%), Positives = 220/348 (63%), Gaps = 2/348 (0%) Query: 21 MTFYPAFGRRASRKEKQIISRSLNYKDGKFVYPAATVMMENSAGSSLSILKDFIKGNPRS 80 + +P FG S+++K++ NY DG FV T M LS+L+D I G + Sbjct: 23 LNLHPVFGENPSKEQKKMYEGFDNYVDGTFVNLVPTTMDMGGISGGLSLLRDAISGG-QD 81 Query: 81 RPPQPLIPEKLLPGSIQESGDTRVTWFGHSAVLLEMDGVTLFLDPMLGRSPSPFPFVGGR 140 R P +P + I S + +TWFGHSA LL +D + +DPMLG SP PF G + Sbjct: 82 RNPDDHLPVTDINWPIINSEEDSLTWFGHSAFLLSIDQKKILVDPMLGPVASPVPFAGSK 141 Query: 141 RYSKQLPIEISELPRIDAVLLSHDHYDHLDYGSIRQLKDKVGMFIVPLGVGAHLQRWGVS 200 RYS+ + I E+P IDAV ++HDHYDHLDY SI +LK+KV F VP GVGAHL RWGV Sbjct: 142 RYSEDMLHIIDEMPPIDAVFITHDHYDHLDYPSILRLKNKVEHFFVPYGVGAHLIRWGVE 201 Query: 201 REKIREKDWWDEFRYAGLTLTSAPARHFSGRSLLDRNSTLWCSWIIRGAETKIFFSGDSG 260 EKI E +WWDE ++ GLT+ P++HFSGR L +RNSTLW W+I G +T+ + SGD G Sbjct: 202 EEKISELNWWDETKFKGLTIAFTPSKHFSGRGLFNRNSTLWGGWVILGNQTRFYTSGDGG 261 Query: 261 YGPHFAEIGEKYGPFDLTLMECGQYDPRWADIHMLPEQTVQAHLDVRGALMIPIHWAAFT 320 Y HF EIGEKYGPF +TLME GQYD RW +HM PE+ VQAHLDV G M+ IHW AFT Sbjct: 262 YDSHFEEIGEKYGPFHITLMEGGQYDHRWDWVHMTPEEAVQAHLDVNGENMMLIHWGAFT 321 Query: 321 LSMHDWTDPVERVFAAAKAHGVRLATPRIGEPV-YTGSAEVPSLAWWK 367 L+ H WT+P+ER AA+ V + P IGE V G P WW+ Sbjct: 322 LAYHGWTEPIERALEAAEKEDVNMLAPSIGETVILDGQYTKPESLWWE 369 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.138 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 561,050,538 Number of extensions: 24379825 Number of successful extensions: 56208 Number of sequences better than 1.0e-05: 417 Number of HSP's gapped: 55409 Number of HSP's successfully gapped: 420 Length of query: 367 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 240 Effective length of database: 412,420,005 Effective search space: 98980801200 Effective search space used: 98980801200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)