BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0013.p (378 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694237.1| NADH-dependent flavin oxidoreductase [Oceanobac... 437 e-121 ref|NP_390301.1| similar to NADH-dependent flavin oxidoreductase... 412 e-114 ref|ZP_00183466.1| hypothetical protein Exigu116701 [Exiguobacte... 394 e-108 ref|ZP_00068999.1| COG1902: NADH:flavin oxidoreductases, Old Yel... 346 6e-94 gb|EAJ06301.1| unknown [environmental sequence] 319 6e-86 >ref|NP_694237.1| NADH-dependent flavin oxidoreductase [Oceanobacillus iheyensis HTE831] dbj|BAC15271.1| NADH-dependent flavin oxidoreductase [Oceanobacillus iheyensis HTE831] Length = 373 Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/368 (58%), Positives = 269/368 (73%), Gaps = 5/368 (1%) Query: 9 LLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITACVYVSR 68 + P F + + LKNR+VMAPMT+ SSN DGTVS EI YY RRSKG GMVITA YV+ Sbjct: 8 MFSPLTFKNGLELKNRLVMAPMTHYSSNPDGTVSDEEISYYARRSKGVGMVITATTYVTP 67 Query: 69 GGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQPVGASN 128 GKGF +F A D +IPSL +LA+ I+ EGAKA+LQIFHGG+ CPP + DG V ASN Sbjct: 68 NGKGFPNQFSAVEDGMIPSLSKLAKGIQNEGAKAILQIFHGGKMCPPSLIPDGDVVSASN 127 Query: 129 VPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQQFFSP 188 +P+ PR L + EIE II FG RRAIEAG+DGVEIHGANGYLLQQFFSP Sbjct: 128 IPA----NSEAAEPRPLKESEIEEIIEAFGETTRRAIEAGYDGVEIHGANGYLLQQFFSP 183 Query: 189 HSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGITMSET 248 SN R DR+GG L+KR+AFPLAV+ VKS V +HA + F+VGYRFSPEEPETPGITM ET Sbjct: 184 FSNRRDDRFGGSLEKRMAFPLAVIEKVKSVVAEHADASFIVGYRFSPEEPETPGITMDET 243 Query: 249 FALIDALKEEGLDYLHVSQMDLWSRPHRGTGD-SRPRIEQIVDRAGSGLPVIGVGSLYSA 307 +D L ++ LDYLHVS MD +S+ RG D ++ RI +++ + +P+IGVGS+Y+A Sbjct: 244 LQFVDVLADKQLDYLHVSLMDFFSKARRGVEDLNKTRISYLLETIDNRVPLIGVGSIYTA 303 Query: 308 DDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPLWRAL 367 +DA K+ ++GI L+A+GR ++I+PDWV+KVAEGR DEI TE++ Q+ LV+PDPLW + Sbjct: 304 EDARKAFNTGIPLLAIGREIIIDPDWVEKVAEGRDDEIITEINKDKQEELVVPDPLWNVI 363 Query: 368 IHTPGWLP 375 H PGW P Sbjct: 364 THAPGWFP 371 >ref|NP_390301.1| similar to NADH-dependent flavin oxidoreductase [Bacillus subtilis] sp|P54524|YQIG_BACSU Probable NADH-dependent flavin oxidoreductase yqiG pir||C69961 NADH-dependent flavin oxidoreductase homolog yqiG - Bacillus subtilis dbj|BAA12582.1| YqiG [Bacillus subtilis] emb|CAB14352.1| yqiG [Bacillus subtilis subsp. subtilis str. 168] Length = 372 Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/372 (52%), Positives = 267/372 (71%), Gaps = 5/372 (1%) Query: 6 YSPLLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITACVY 65 Y PL EPF F S +++ NR+ +APMT+ +SNEDGT+S E+DY + RSK GMVITAC Sbjct: 5 YKPLFEPFTFKSGVTINNRIAVAPMTHYASNEDGTISEAELDYIIPRSKEMGMVITACAN 64 Query: 66 VSRGGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQPVG 125 V+ GK F G+ D IP L++LA+AI+ +GAKAV+QI HGG +CP E + VG Sbjct: 65 VTPDGKAFPGQPAIHDDSNIPGLKKLAQAIQAQGAKAVVQIHHGGIECPSELVPQQDVVG 124 Query: 126 ASNVPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQQF 185 S+V G + RAL ++E+E I+ FG A RRAIEAGFDGVEIHGANGYL+QQF Sbjct: 125 PSDV---FDNGKQ--IARALTEEEVENIVKAFGEATRRAIEAGFDGVEIHGANGYLIQQF 179 Query: 186 FSPHSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGITM 245 +SP +N R+DRWGG +KRLAFPLA++ VK A +HA FLVGYR SPEEPETPG+TM Sbjct: 180 YSPKTNQRTDRWGGSDEKRLAFPLAIVDEVKKAASEHAKGAFLVGYRLSPEEPETPGLTM 239 Query: 246 SETFALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVGSLY 305 +ET+ L+DAL ++ LDYLH+S MD+ S+ RG +R R++ + +R G+ +P+I VGS++ Sbjct: 240 TETYTLVDALGDKELDYLHISLMDVNSKARRGADPTRTRMDLLNERVGNKVPLIAVGSIH 299 Query: 306 SADDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPLWR 365 SADDAL + +GI LVA+GR +L++P+W KV EGR +I+T + ++ +P+PLW+ Sbjct: 300 SADDALAVIENGIPLVAMGREILVDPNWTVKVKEGREKQIETVIKGTDKEKYHLPEPLWQ 359 Query: 366 ALIHTPGWLPVK 377 A+++T GW+P K Sbjct: 360 AIVNTQGWVPYK 371 >ref|ZP_00183466.1| hypothetical protein Exigu116701 [Exiguobacterium sp. 255-15] Length = 371 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/369 (54%), Positives = 259/369 (70%), Gaps = 7/369 (1%) Query: 9 LLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITACVYVSR 68 + + F + ++LKNR++MAPMTN ++ E+G VS E+ YY RS G G VITAC V+ Sbjct: 6 MFDTFTLPNGVTLKNRIMMAPMTNYAAEENGEVSEAELAYYAARSGGVGAVITACANVTA 65 Query: 69 GGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQPVGASN 128 G+GF EFGA+RDEL+PSL+RLA I+ +GAKA+LQIFH GR PPE L+ GQ V AS Sbjct: 66 DGQGFPNEFGAERDELVPSLKRLATTIQDQGAKAILQIFHAGRMAPPE-LVGGQTVSASA 124 Query: 129 VPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQQFFSP 188 V E G PRAL E+E II FG A RRA+EAGFDGVEIHGAN YL+QQF SP Sbjct: 125 VAPEREGAM---TPRALEAAEVEAIIEAFGQATRRAMEAGFDGVEIHGANTYLIQQFVSP 181 Query: 189 HSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGITMSET 248 HSN R D+WGG L+KRLAFPLAV+ AV++ K+ S F+VGYRFSPEE E PGIT+ +T Sbjct: 182 HSNRREDKWGGSLEKRLAFPLAVVDAVEAVAKQDPS--FIVGYRFSPEEVENPGITLDDT 239 Query: 249 FALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVGSLYSAD 308 L+DAL ++ LDYLHVS MD ++ R ++R I + +R G +PVIGVGSL++ + Sbjct: 240 MQLVDALAKKDLDYLHVSVMDFFAGSIRDQNETRSPISLVQERVGQQVPVIGVGSLHTPE 299 Query: 309 DALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPLWRALI 368 + +SL + LVALGR L++EP WV+KV G + I TELDP+AQ LV+PD LW+ + Sbjct: 300 EVERSLEV-VPLVALGRELIMEPKWVEKVEAGETESIRTELDPSAQAELVVPDALWQGIT 358 Query: 369 HTPGWLPVK 377 PGW P+K Sbjct: 359 SRPGWFPIK 367 >ref|ZP_00068999.1| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Oenococcus oeni MCW] Length = 372 Score = 346 bits (887), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 172/364 (47%), Positives = 235/364 (64%), Gaps = 4/364 (1%) Query: 4 TDYSPLLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITAC 63 T+Y L+ F+F + I +KNR+V+ PMT SS EDG V+ E+DY+ R+ GAG+ IT Sbjct: 2 TNYQ-FLQTFEFKNGIKIKNRIVIPPMTECSSFEDGNVTKNELDYFALRTGGAGIFITPA 60 Query: 64 VYVSRGGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQP 123 VS GKGF G+ D+++PSL ++A IK G KA+LQ+ H GR + L Q Sbjct: 61 SNVSSLGKGFEGQLSCASDDMLPSLTQVANTIKVNGTKAILQLHHAGRISDSKILRGQQA 120 Query: 124 VGASNVPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLLQ 183 VG S V S PG +PR L ++EI II+DFG A RRAIEAGFDG+E+HGA YL+Q Sbjct: 121 VGPSAVASLRPGS---EIPRELTNEEILQIISDFGQATRRAIEAGFDGIELHGAKTYLIQ 177 Query: 184 QFFSPHSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPGI 243 QFFSPHSN RSD WGG L+KR+ FPLAV+ V V+++A PF++GYR SPEE ETPGI Sbjct: 178 QFFSPHSNRRSDDWGGSLKKRMKFPLAVVEQVHKIVERYADRPFIIGYRISPEEIETPGI 237 Query: 244 TMSETFALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVGS 303 +++T ALID LK++ +DYLH+S D+W + D P ++QI + + +P+I VG+ Sbjct: 238 RLADTLALIDVLKKQPIDYLHISTRDVWQTSKNDSDDQIPVVDQIKEHTKNEVPLIAVGN 297 Query: 304 LYSADDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDPL 363 + ++A K + G + VALGR +L EP WV+KV G+ I+ L+ L I PL Sbjct: 298 IAKPEEAEKVIEDGFNFVALGREMLREPQWVEKVQNGQEAGINYSLNETDLKQLRITPPL 357 Query: 364 WRAL 367 W+ L Sbjct: 358 WKFL 361 >gb|EAJ06301.1| unknown [environmental sequence] Length = 383 Score = 319 bits (818), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 167/376 (44%), Positives = 231/376 (61%), Gaps = 2/376 (0%) Query: 4 TDYSPLLEPFQFASSISLKNRVVMAPMTNLSSNEDGTVSGPEIDYYVRRSKGAGMVITAC 63 + + L +PFQF + L+N VMAPMT S+N DGTVS EI YY RRS G GMVIT C Sbjct: 3 SQFPTLFKPFQFKNGSILRNTTVMAPMTTWSANLDGTVSDEEIAYYRRRSNGVGMVITGC 62 Query: 64 VYVSRGGKGFAGEFGADRDELIPSLRRLAEAIKGEGAKAVLQIFHGGRQCPPEQLLDGQP 123 +V+ G GF EF A D+ SL+ LA+AIK GAKAVLQ+FH G + PE L++G Sbjct: 63 PHVTPNGVGFYNEFAAFDDKFTLSLKALADAIKSGGAKAVLQVFHAGNKAVPE-LVEGGV 121 Query: 124 VGASN-VPSELPGGGHGPVPRALADDEIEGIIADFGAAARRAIEAGFDGVEIHGANGYLL 182 V +SN + + P G PR L EI I+ FG RRAIEAGFDG+E+HGA+G+L+ Sbjct: 122 VSSSNAMATPGPFNGSDIAPRELTPSEINEIVTAFGQVTRRAIEAGFDGIELHGAHGFLI 181 Query: 183 QQFFSPHSNTRSDRWGGDLQKRLAFPLAVLRAVKSAVKKHASSPFLVGYRFSPEEPETPG 242 Q F SP N R D+WGG L+KR+AFPLAV+ VK K A + F++GYRFSPEE + G Sbjct: 182 QNFLSPRFNLRIDQWGGSLEKRMAFPLAVVSEVKRVAKALAPTDFIIGYRFSPEEADIDG 241 Query: 243 ITMSETFALIDALKEEGLDYLHVSQMDLWSRPHRGTGDSRPRIEQIVDRAGSGLPVIGVG 302 + + +T ALID L+ ++Y+H S D+ + + + IE+IV + +P+I G Sbjct: 242 LKIEDTLALIDELQSLEVNYIHASLADVVNSKVMYSANHELTIERIVSHLQNQIPLIVAG 301 Query: 303 SLYSADDALKSLSSGISLVALGRPLLIEPDWVQKVAEGRADEIDTELDPAAQDALVIPDP 362 + + D A K+L+ G +L A+G+ L+I P+WV+ V + E+D + + IP Sbjct: 302 RIDTPDVAEKALNMGATLAAIGKGLVINPNWVELVQQDNLQEMDFSIAKHDIEQKSIPMG 361 Query: 363 LWRALIHTPGWLPVKS 378 LW+ + T GW PV + Sbjct: 362 LWKIIESTTGWFPVNT 377 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 608,715,145 Number of extensions: 27597111 Number of successful extensions: 68768 Number of sequences better than 1.0e-05: 797 Number of HSP's gapped: 67326 Number of HSP's successfully gapped: 797 Length of query: 378 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 251 Effective length of database: 412,420,005 Effective search space: 103517421255 Effective search space used: 103517421255 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)