BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0006.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242382.1| glucose-resistance amylase regulator [Bacillus ... 257 3e-67 ref|NP_622156.1| Transcriptional regulator [Thermoanaerobacter t... 256 5e-67 ref|NP_622456.1| Transcriptional regulator [Thermoanaerobacter t... 253 6e-66 ref|NP_244107.1| transcriptional regulator involved in carbon ca... 244 2e-63 ref|NP_834378.1| Catabolite control protein A [Bacillus cereus A... 237 4e-61 >ref|NP_242382.1| glucose-resistance amylase regulator [Bacillus halodurans] pir||D83839 glucose-resistance amylase regulator BH1516 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05235.1| glucose-resistance amylase regulator [Bacillus halodurans] Length = 343 Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 132/334 (39%), Positives = 208/334 (62%), Gaps = 2/334 (0%) Query: 14 KPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKSN 73 +PTI+DVA+ A VSI+TVSR++N E + V+E IEK+ Y PNA ARGLI KK++ Sbjct: 3 RPTIKDVAREANVSIATVSRILNKGVGYSEKTKQHVLETIEKMGYHPNAVARGLINKKTD 62 Query: 74 TLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGIV 133 ++G+L P++ L A +++G+++ G S+++CNT D ++ + Y+ EKQVDG++ Sbjct: 63 SIGVLFPNVSGLISAQILQGIEEVAQSHGISVIVCNTASDHKKTMDYLTFLQEKQVDGLL 122 Query: 134 YASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQIG 193 + S +L + E + +P + +S+ SE DVP V+VDDE A+YDAV++LIE GHT IG Sbjct: 123 FISQLLTKDYREFIKKMGVPIITISAFSETNDVPYVKVDDEAASYDAVRYLIEKGHTDIG 182 Query: 194 MIGFNHDNSVSGPPRYEGFVRALNEAGLEH-SIEQVRYANHRFEHAYQAAHELFTDYPQV 252 MI + ++G PR +G+ RAL EA L + + FE A +L +P + Sbjct: 183 MISGPPTDPLAGHPRIQGYKRALREADLPFIETKMTWHKGFYFEDGQVAFQKLLKSHPSI 242 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 TALF +DE A+ A+S I VP Q+SVIG+D+ +++ M IP LTT++QP ++G + Sbjct: 243 TALFAASDELAISAVSSAYHLGIRVPHQLSVIGYDDTKLAKMSIPPLTTVSQPFEEMGAQ 302 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRESSRER 346 A +KL + + + + + M H++ RES + R Sbjct: 303 ATKKLIDSIQSREPNT-SLTMPHRIAERESVKNR 335 >ref|NP_622156.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM23760.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 337 Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 138/331 (41%), Positives = 208/331 (62%), Gaps = 2/331 (0%) Query: 13 MKPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKS 72 M TI+DVA+ A+VSI+TVSRV+N V E R RV+EAI+K Y+PNA AR L +K+ Sbjct: 1 MGATIKDVAREAKVSIATVSRVLNNSAVVTEETRQRVLEAIKKTGYKPNALARSLKIQKT 60 Query: 73 NTLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGI 132 +T+GL+IPDI + ++ V+RG++D Y++ +CNTD+ +++ + YI+ EKQVDGI Sbjct: 61 HTIGLIIPDISSTFYPEVVRGIEDIAAMYNYNIFLCNTDQKEDKEIKYIEILGEKQVDGI 120 Query: 133 VYASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQI 192 ++ DV+ + ++P VL + +E PSV +D+E+AAYDAVK+LI LGH +I Sbjct: 121 IFMGDVVRDSVIQAFNEFKVPVVLAGTQDKEKRYPSVMIDNEKAAYDAVKYLISLGHKKI 180 Query: 193 GMIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQV 252 GMI + + ++G R EG+ RAL E G+++ E V + AY A +L +V Sbjct: 181 GMIAGSMQDPIAGLQRIEGYKRALEEHGIKYDPELVVEGEFKTRKAYLAMLKLLEH--KV 238 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 TA+F +D+ A AI+ + D N+ VP + V+GFDN +S ++ P +TTI QP Y +G Sbjct: 239 TAVFAASDDMAAAAINAIFDSNLRVPDDIHVVGFDNTYISTIFRPTITTILQPAYDIGAV 298 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRESS 343 A L +LL +E + H+LIVRES+ Sbjct: 299 AMRLLTKLLGKEPIEEMHVILPHQLIVREST 329 >ref|NP_622456.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM24060.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 337 Score = 253 bits (645), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 134/330 (40%), Positives = 204/330 (61%), Gaps = 4/330 (1%) Query: 16 TIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKSNTL 75 TI DVAK+A VSI+TVSRV N V E R +V++A E+L Y+P+ AR L KK+NT+ Sbjct: 3 TIDDVAKLAGVSIATVSRVFNNSPWVSEKTREKVLKAAEELGYKPSMPARSLAMKKTNTI 62 Query: 76 GLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGIVYA 135 GL++PDI N Y+A V+RG++D C Y++++CN D +E+ YID + VDG+++ Sbjct: 63 GLIVPDISNPYYAEVVRGIEDVCNIYKYNIILCNADNKREKEFQYIDMLKNRWVDGVIFH 122 Query: 136 SDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQIGMI 195 D E YE + VL + + +FDVP V +D+ +AAYDAV +LI LGH +IG+I Sbjct: 123 CDYFSEEHYEVFKNSNLKVVL-AGRTTKFDVPYVGIDNFKAAYDAVNYLISLGHKRIGII 181 Query: 196 GFNHDN---SVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQV 252 D+ ++ R G+ +AL + GL E V+ AN +++ Y AA E+ + Sbjct: 182 HGPLDDMKETIDSVDRLNGYKQALIDNGLPIYDELVKEANFKYKGGYSAAMEMLKGNVRP 241 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 TA+F ++D AMGAI+ + D+ + P VSVIGFDN+ +S P LTT++QP+Y++G Sbjct: 242 TAIFAISDIMAMGAINAVFDKGLSCPEDVSVIGFDNIDLSEATRPPLTTVSQPMYEIGAI 301 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRES 342 AA L +++ +E ++HKL++R S Sbjct: 302 AARMLIKIINGENLESSQVILKHKLVLRNS 331 >ref|NP_244107.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] pir||A84055 transcription regulator involved in carbon catabolite control ccpA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06960.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] Length = 333 Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/332 (37%), Positives = 203/332 (61%) Query: 13 MKPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKS 72 M TI DVA+ A VS++TVSRV+N V + R +V+EAIE+L Y+PNA ARGL K++ Sbjct: 1 MNTTIYDVAREAGVSMATVSRVVNGNPNVKPATRKKVLEAIERLGYRPNAVARGLASKRT 60 Query: 73 NTLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGI 132 T+G++IPDI +++FA + RG++D Y++++CN+D++KE+ + I+T EKQVDGI Sbjct: 61 TTVGVVIPDISSIFFAELARGIEDIATMYKYNIILCNSDQNKEKEIHLINTLLEKQVDGI 120 Query: 133 VYASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQI 192 V+ + E E+ +P VL ++ E ++PSV +D ++AA+DAV +LIE GHT I Sbjct: 121 VFMGGEITNEHAEEFKRAHVPVVLAATLDAEKEIPSVNIDYKQAAFDAVTYLIEKGHTSI 180 Query: 193 GMIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQV 252 GM+ + ++ V+G +Y G+ AL E G+ V ++ ++ A + + Sbjct: 181 GMVSGSLEDPVNGYQKYAGYREALEERGVAFDESMVVIGDYTYDSGIDAMNVFTKLEKRP 240 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 TA+F DE A+G I +D + +P + VIGFDN R++ M P L+T+ QPIY +G Sbjct: 241 TAIFVATDEMALGVIHGAQDHGLNIPDDIEVIGFDNTRLATMVRPTLSTVVQPIYDIGAV 300 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRESSR 344 + L + + +V ++ H++ R+S+R Sbjct: 301 SMRLLTKYMNKEEVSEHIVELPHRIEFRQSTR 332 >ref|NP_834378.1| Catabolite control protein A [Bacillus cereus ATCC 14579] gb|AAP11579.1| Catabolite control protein A [Bacillus cereus ATCC 14579] Length = 332 Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 202/332 (60%) Query: 13 MKPTIRDVAKMAEVSISTVSRVMNAPQTVVESKRSRVIEAIEKLKYQPNAFARGLIYKKS 72 M TI DVA+ A VS++TVSRV+N V + R +V+EAI++L Y+PNA ARGL KK+ Sbjct: 1 MNVTIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKT 60 Query: 73 NTLGLLIPDIENLYFAGVIRGMQDACIKLGYSLMICNTDRDKERMLSYIDTFHEKQVDGI 132 T+G++IPDI N ++A + RG++D Y++++ N+D++KE+ ++T KQVDGI Sbjct: 61 TTVGVIIPDISNTFYAELARGIEDIATMYKYNIILSNSDQNKEKEFHLLNTMLGKQVDGI 120 Query: 133 VYASDVLYPECYEKLTGCRIPFVLVSSHSEEFDVPSVEVDDERAAYDAVKFLIELGHTQI 192 V+ + + E+ +P VL +S E+ + PSV +D +AAYDA+K IE GH +I Sbjct: 121 VFMGEDITDIHIEEFKKSPVPIVLAASFDEQNETPSVNIDYTQAAYDAMKHFIEQGHKRI 180 Query: 193 GMIGFNHDNSVSGPPRYEGFVRALNEAGLEHSIEQVRYANHRFEHAYQAAHELFTDYPQV 252 G + + + +G+ +AL EAG+ + V ++ ++ +A +L+++ + Sbjct: 181 GFVSGPFIDKAGSAKKLQGYKKALEEAGISYDENLVIDGDYTYDSGIEAFEKLWSNDEKP 240 Query: 253 TALFCVADEFAMGAISYLKDRNILVPGQVSVIGFDNLRMSGMYIPKLTTIAQPIYQLGYR 312 TA+F +DE A+G I +D + VP V V+GFDN R++ M P+L+T+ QP+Y +G Sbjct: 241 TAIFVSSDEMALGVIHAAQDAGLNVPTDVEVLGFDNTRLALMVRPQLSTVVQPMYDIGAV 300 Query: 313 AAEKLHELLTTGKVEVPTEKMEHKLIVRESSR 344 A L + + KVE T + H++ R+S++ Sbjct: 301 AMRLLTKYMNKEKVEDHTVILPHRIQFRDSTK 332 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 481,147,582 Number of extensions: 19489891 Number of successful extensions: 47740 Number of sequences better than 1.0e-05: 1188 Number of HSP's gapped: 46084 Number of HSP's successfully gapped: 1191 Length of query: 346 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 220 Effective length of database: 415,135,104 Effective search space: 91329722880 Effective search space used: 91329722880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)