BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0002.p (363 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00017489.1| hypothetical protein [Chloroflexus aurantiacus] 320 3e-86 gb|EAJ50008.1| unknown [environmental sequence] 286 4e-76 gb|EAI29973.1| unknown [environmental sequence] 285 2e-75 ref|NP_353619.1| AGR_C_1050p [Agrobacterium tumefaciens] >gi|179... 280 5e-74 ref|NP_442748.1| membrane bound sugar transport protein [Synecho... 274 2e-72 >ref|ZP_00017489.1| hypothetical protein [Chloroflexus aurantiacus] Length = 306 Score = 320 bits (820), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 150/261 (57%), Positives = 200/261 (76%), Gaps = 10/261 (3%) Query: 109 NVQEQGWKTI---PD---FTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTI 162 +V+ GW T+ P+ FT+DNY VL G V G+ A NTLT+ Sbjct: 50 DVKTSGWWTVVTNPEKARFTLDNYRTVLGLPVAGRAAPTGGSRV----GMEVALINTLTV 105 Query: 163 AVPATVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNG 222 A+PAT+IP+LIA+FAAY FAW+ FPGR+ LF++++AMLV+P+Q++L+P+L+DY +L L G Sbjct: 106 ALPATIIPILIAAFAAYGFAWIDFPGRRALFILVVAMLVVPLQISLVPILRDYVALQLGG 165 Query: 223 SYLGIWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALA 282 +YLG+WLAHT FGLPL Y +YN+IS +P+D+FESAF+DGA+HFTIF+RLILPLS PALA Sbjct: 166 TYLGVWLAHTGFGLPLAVYLLYNYISTIPRDIFESAFLDGATHFTIFTRLILPLSTPALA 225 Query: 283 SIGIFQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPL 342 S IFQFLW WND LV+L+F+G +P VQV++ ++ L+G G +WHLLTS AFISM++PL Sbjct: 226 SFAIFQFLWTWNDLLVALVFLGAEPRVQVVTQRLLSLLGQFGQEWHLLTSGAFISMIVPL 285 Query: 343 AIFFLLQKYFVRGLMGGSVKG 363 +FF LQ++FVRGLM GSVKG Sbjct: 286 IVFFSLQRFFVRGLMAGSVKG 306 >gb|EAJ50008.1| unknown [environmental sequence] Length = 363 Score = 286 bits (733), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 225/371 (60%), Gaps = 40/371 (10%) Query: 21 ICFIWLLPTLGLFISSFRPAADILQTGWWKVFPHQEWTQGETLQLSKDTDLRQPIEVNGQ 80 + +W++PT+GL +SSFR + TGWW L S+ ++ R+ N Q Sbjct: 3 LVLLWIVPTVGLLVSSFRDKDQLAITGWWT-----------ALSTSERSEFRRTGTKNDQ 51 Query: 81 TYTDDQ-LKAGVKVDDSRLMWENRRARTINVQEQGWKTIPDFTMDNYNNVLSGKEYKLTE 139 + + + G +D S + + N+ E +F + + + EYK Sbjct: 52 VKQEGEYIIKGNFLDASGTIIQTFSTSFKNLTEYNSGDTAEFKDGSLFTLHADGEYKWVS 111 Query: 140 A-----------------------DGSETVQKGTGLSQAFWNTLTIAVPATVIPVLIASF 176 D V K G+ Q+F NTL + +PATVIP++IASF Sbjct: 112 NSPFEHERGKRIFYVAKVPATFSLDNYREVLKAEGVGQSFINTLKVTIPATVIPIMIASF 171 Query: 177 AAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLG----LNG-SYLGIWLAH 231 AAYAFAW++FPG++ +F+ ++ +LV+P+Q++LIP+L Y +G ++G SY GIW AH Sbjct: 172 AAYAFAWMKFPGKQFMFLTVVGLLVVPLQMSLIPLLSIYNDIGNYFGVSGKSYPGIWFAH 231 Query: 232 TAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGIFQFLW 291 T FGLPL Y + N+I LP ++ ESA IDGA+H IFSR++LPLSVPALAS IFQFLW Sbjct: 232 TGFGLPLAIYLLRNYIGSLPGEIIESARIDGATHMQIFSRIVLPLSVPALASFCIFQFLW 291 Query: 292 VWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFFLLQKY 351 VWND LV+L+F+G + V++ K+ +L+GSRG++W +LTS+AFIS+++PL +FF LQ+Y Sbjct: 292 VWNDLLVALVFLGKKDDQIVLTSKLRELLGSRGDNWEILTSSAFISIIIPLIVFFALQRY 351 Query: 352 FVRGLMGGSVK 362 FVRGL+ GSVK Sbjct: 352 FVRGLVTGSVK 362 >gb|EAI29973.1| unknown [environmental sequence] Length = 366 Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 159/387 (41%), Positives = 228/387 (58%), Gaps = 61/387 (15%) Query: 17 VLGVICFIWLLPTLGLFISSFRPAADILQTGWWKVFPH---QEWTQGETL--QLSKD--- 68 +L V +W+LPT GLF+SSFR + +GWW F E + ET Q KD Sbjct: 1 MLLVFVIVWVLPTFGLFVSSFRDKDLLATSGWWTTFKTNQVNEIYRTETFENQFEKDGVF 60 Query: 69 ---------------------TDLRQPIEVNGQTYTDDQLKAGVKVDDSRLMW------E 101 + +VN + +Q + +K ++ +W + Sbjct: 61 FIKGNLLDENSGKKIINFGITSKEMNKYKVNEKAKLKNQSEIEIK-ENGEYIWRSEKPFK 119 Query: 102 NRRARTINVQEQGWKTIPDFTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLT 161 ++R + I + + P FT+DNY VL + G+ QAF NTLT Sbjct: 120 HKRGKRIFITAL---SPPKFTLDNYKEVLFKE-----------------GVGQAFLNTLT 159 Query: 162 IAVPATVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLG-L 220 +A+P+T+IP++I SF AYA +W++F GR TLF II+A LV+P+Q+ LIP+L Y +G L Sbjct: 160 VAIPSTIIPLIICSFFAYALSWMKFLGRDTLFAIIVASLVVPLQMCLIPLLSIYNDVGAL 219 Query: 221 NG----SYLGIWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPL 276 G SY G+W+AHT FGL T+ + NFI LP ++ E+A +DGA+H+ IF R+I+PL Sbjct: 220 FGIGAKSYPGVWMAHTGFGLASTTFLLRNFIKSLPHEMIEAARVDGATHYDIFLRIIIPL 279 Query: 277 SVPALASIGIFQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFI 336 SVPA AS+ I QFLWVWND LV LIF+ PS +++ K+ +L+GSRG +W +LT+ AF+ Sbjct: 280 SVPAFASVFILQFLWVWNDLLVGLIFLDQVPSEIILTAKLRELLGSRGENWEILTTGAFV 339 Query: 337 SMLMPLAIFFLLQKYFVRGLMGGSVKG 363 SM++PL IFF LQ+YF+RGL+ GSVKG Sbjct: 340 SMIVPLTIFFALQRYFIRGLVAGSVKG 366 >ref|NP_353619.1| AGR_C_1050p [Agrobacterium tumefaciens] ref|NP_531294.1| ABC transporter, membrane spanning protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||C97431 alpha-glucosides transport system permease protein aglG [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AD2649 ABC transporter, membrane spanning protein aglG [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK86404.1| AGR_C_1050p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL41610.1| ABC transporter, membrane spanning protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 386 Score = 280 bits (715), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 153/377 (40%), Positives = 216/377 (57%), Gaps = 63/377 (16%) Query: 28 PTLGLFISSFRPAADILQTGWWKVFPHQEWTQGETL---QLSKDTDLRQPIEVNGQTYTD 84 PTLG+ +SS R I +GWW F E T L + K R I G + + Sbjct: 31 PTLGILVSSLRDKDQITVSGWWTAFSSSEQTAAVRLADASVQKQDGSRYVIA--GNVFEN 88 Query: 85 DQ----------------LKAGVKVD-----------------DSRLMWENRRARTINVQ 111 Q KAG D + +E R + + + Sbjct: 89 GQGGKVAAFGVRVQEPTAFKAGEAADIGDGETLLVNSDGTYEYSKAVSFEGSRGKRVYIS 148 Query: 112 EQGWKTIPDFTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVPATVIPV 171 T P FT+DNY VL+ + G+ Q+F N+LT+AVPATVIP+ Sbjct: 149 V---ATPPVFTLDNYRTVLTSE-----------------GIGQSFVNSLTVAVPATVIPI 188 Query: 172 LIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGL-----NGSYLG 226 LIA+FAAYA +W+ F GR L +++ ++V+P+Q++LIP+L+ Y +G + +Y G Sbjct: 189 LIAAFAAYALSWMNFSGRNLLIAMVVGLIVVPLQMSLIPLLRLYNEIGTIFGVPSKTYAG 248 Query: 227 IWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGI 286 IWLAHTAFGLPL Y + N+IS LPK++ ESA +DGAS F IF ++ILPLS PALAS I Sbjct: 249 IWLAHTAFGLPLAIYLLRNYISGLPKEIIESARVDGASDFEIFVKIILPLSFPALASFAI 308 Query: 287 FQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFF 346 FQFLW WND LV+++F+G Q V++ + L+GSRG +W +LT++AF+++++PL +FF Sbjct: 309 FQFLWTWNDLLVAMVFLGTQKDELVLTGALNALLGSRGGNWEILTASAFVTIIVPLGVFF 368 Query: 347 LLQKYFVRGLMGGSVKG 363 LQ+Y VRGL+ GSVKG Sbjct: 369 ALQRYLVRGLLAGSVKG 385 >ref|NP_442748.1| membrane bound sugar transport protein [Synechocystis sp. PCC 6803] pir||S75972 hypothetical protein - Synechocystis sp. (strain PCC 6803) Length = 298 Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/359 (43%), Positives = 217/359 (60%), Gaps = 77/359 (21%) Query: 4 KKKRKGSKTIVNLVLGVICFIWLLPTLGLFISSFRPAADILQTGWWKVFPHQEWTQGETL 63 +K K +++ + I FIW LP+LGLFISS RP +G+ L Sbjct: 16 RKTEFWQKLPIHIAILTIAFIWTLPSLGLFISSLRP-------------------RGDML 56 Query: 64 QLSKDTDLRQPIEVNGQTYTDDQLKAGVKVDDSRLMWENRRARTINVQEQGWKTIPDFTM 123 T P+E+ F + Sbjct: 57 STGWWTVFWHPLEIT-----------------------------------------QFYL 75 Query: 124 DNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVPATVIPVLIASFAAYAFAW 183 NY +VL + +G+ +AF N+LTIAVPATVIP+ IA+FAAYAFAW Sbjct: 76 GNYGDVL-----------------RSSGMGEAFLNSLTIAVPATVIPIAIATFAAYAFAW 118 Query: 184 LRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNGSYLGIWLAHTAFGLPLVTYFM 243 + FPGR+ LF++++ +LV+P+Q LIPVL+ Y LGL G++LG+WLAHTA+GLPL Y + Sbjct: 119 MTFPGRQLLFILVVCLLVVPLQTTLIPVLRVYAQLGLAGTFLGVWLAHTAYGLPLGIYLL 178 Query: 244 YNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGIFQFLWVWNDYLVSLIFI 303 N+I LPKDL E+A +DGASH IF++LI+PLS+PA+AS +FQFLWVWND LV+L+++ Sbjct: 179 RNYIGALPKDLIEAAAVDGASHLKIFTKLIVPLSMPAIASFAVFQFLWVWNDLLVALVYL 238 Query: 304 GNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFFLLQKYFVRGLMGGSVK 362 G V +++++++LVGSRG DW+LLT+ AFISM++PL +FF LQ+YFVRG++ GSVK Sbjct: 239 GGTADVAPVTIQLSNLVGSRGQDWYLLTAGAFISMIVPLMVFFGLQRYFVRGILAGSVK 297 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 549,760,801 Number of extensions: 22787645 Number of successful extensions: 83547 Number of sequences better than 1.0e-05: 1762 Number of HSP's gapped: 82431 Number of HSP's successfully gapped: 1764 Length of query: 363 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 236 Effective length of database: 412,420,005 Effective search space: 97331121180 Effective search space used: 97331121180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)