BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0014.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00033096.1| COG0406: Fructose-2,6-bisphosphatase [Burkhol... 117 1e-25 ref|NP_295116.1| phosphoglycerate mutase, putative [Deinococcus ... 114 9e-25 gb|EAK07054.1| unknown [environmental sequence] 112 3e-24 emb|CAC05494.1| phosphoglycerate mutase-like protein [Arabidopsi... 111 8e-24 ref|NP_196032.1| phosphoglycerate/bisphosphoglycerate mutase fam... 111 9e-24 >ref|ZP_00033096.1| COG0406: Fructose-2,6-bisphosphatase [Burkholderia fungorum] Length = 223 Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/208 (37%), Positives = 109/208 (52%), Gaps = 19/208 (9%) Query: 2 TTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLS-----GEQWDYIYSSDL 56 T I IRHG T WN+ RIQGH D PL GL QA +A R++ G + D IYSSDL Sbjct: 3 TQILFIRHGETDWNRIKRIQGHVDIPLATTGLAQAQRLARRMAEEAKQGARLDAIYSSDL 62 Query: 57 LRAVQTAEVISKRLGIPIAGQVPGVREMNGGLIEGTTEDERVQRWG---SGWKSMDMGLE 113 RA QTA+ ++ LG+P+ + +RE + G +G DE QR+ + W++ D G Sbjct: 63 QRAQQTAQPVADALGLPLQLRE-NLRERSYGAFQGHDNDEIAQRFPDEYAHWQTRDPGFS 121 Query: 114 SDESGQQRG-----SRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGE----LL 164 + QR AIE + A HPG RI V+HG +L +R+ GL + L Sbjct: 122 PPDGESQRALYHRVLHAIEPLVAAHPGGRIACVAHGGVL-DCVRRFACGLPLDAPRDYPL 180 Query: 165 KNTSITHIVKDNSGWTCALYNCVAHMEA 192 NTS+ + DN T + V+H++A Sbjct: 181 LNTSVNTVDFDNGKATIVTWADVSHLDA 208 >ref|NP_295116.1| phosphoglycerate mutase, putative [Deinococcus radiodurans] pir||A75400 probable phosphoglycerate mutase - Deinococcus radiodurans (strain R1) gb|AAF10964.1| phosphoglycerate mutase, putative [Deinococcus radiodurans] Length = 237 Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 13/204 (6%) Query: 2 TTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDYIYSSDLLRAVQ 61 T ++RHG + WN GR QG TD PL GL QAA +AERL+G+ +D +YSSDL RA Q Sbjct: 19 TEFWVVRHGESTWNAGGRYQGQTDVPLSAVGLLQAACLAERLTGQVFDAVYSSDLTRARQ 78 Query: 62 TAEVISKRL-GIPIAGQVPGVREMNGGLIEGTTEDERVQRW--------GSGWKSMDMGL 112 TA +++RL G P P +RE++ G + G E +R+ W + G Sbjct: 79 TAGAVAERLAGAPPVQLSPELREIDVGELTGLVVTEIRERYPDYLAALQADPWTTQRPGG 138 Query: 113 ESDESGQQRGSRAIEEIAARHPGKRILIVSHGAILRSSLRKL---VPGLDVGEL-LKNTS 168 ES R A + A HPG R+L+ +HG ++R ++ VPG L + NTS Sbjct: 139 ESMADLFGRCGEAFHALRAAHPGGRVLVFTHGGVVRVAVGLALGGVPGHAWSRLSVTNTS 198 Query: 169 ITHIVKDNSGWTCALYNCVAHMEA 192 IT ++ T +N AH+EA Sbjct: 199 ITRVLLGEHSGTLLGFNDEAHLEA 222 >gb|EAK07054.1| unknown [environmental sequence] Length = 225 Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/210 (36%), Positives = 108/210 (51%), Gaps = 21/210 (10%) Query: 2 TTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGE-----QWDYIYSSDL 56 T I IRHG T WN+ RIQGH D PL GL QA +A R++ E + D IYSSDL Sbjct: 3 TQILFIRHGETDWNQIKRIQGHIDIPLATTGLAQAQRLARRIANEVKEGARLDAIYSSDL 62 Query: 57 LRAVQTAEVISKRLGIPIAGQVPGVREMNGGLIEGTTEDERVQRWG---SGWKSMDMGLE 113 RA QTA+ I+ LG+P+ + G+RE + G +G DE R+ + W++ D G Sbjct: 63 QRAQQTAQPIADALGLPLQLR-EGLRERSYGAFQGHDSDEIAVRFPDEYAHWQTRDPGFA 121 Query: 114 SDESGQQRGS-----RAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGL------DVGE 162 E QR A+E + A HPG RI +V+HG +L +R+ GL D Sbjct: 122 PPEGESQRVFYHRVLHAVEPLVAAHPGGRIAVVAHGGVL-DCVRRFACGLPLEAPRDYAL 180 Query: 163 LLKNTSITHIVKDNSGWTCALYNCVAHMEA 192 L + ++ D S T + V+H++A Sbjct: 181 LNASINVVDYADDGSKATVVAWADVSHLDA 210 >emb|CAC05494.1| phosphoglycerate mutase-like protein [Arabidopsis thaliana] Length = 233 Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 113/202 (55%), Gaps = 11/202 (5%) Query: 1 MTTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDY-IYSSDLLRA 59 +T I L+RHG T WN GRIQG ++ L+E GL+QA AIAERL E+ +YSSDL RA Sbjct: 19 VTEIVLVRHGETTWNAAGRIQGQIESDLNEVGLKQAVAIAERLGKEERPVAVYSSDLKRA 78 Query: 60 VQTAEVISKRLGIPIAGQVPGVREMNGGLIEGT-------TEDERVQRWGSGWKSMDM-- 110 TA +I+K P +VP ++E + G ++G E E + S +++ Sbjct: 79 KDTALMIAKTCFCPEVIEVPDLKERHVGSLQGLYWKEGAEKEPEAYSAFFSSQNDLEIPG 138 Query: 111 GLESDESGQQRGSRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGELLKNTSIT 170 G ES + R A+E+IA +H G+R+++V+HG +LR+ ++ G+LL N S+ Sbjct: 139 GGESFDQLADRSMDALEQIAKKHKGERVIVVTHGGVLRAIYLRITQASSAGKLL-NASVN 197 Query: 171 HIVKDNSGWTCALYNCVAHMEA 192 + + W ++ V+H+ + Sbjct: 198 VVHLRDQKWIIDSWSDVSHLSS 219 >ref|NP_196032.1| phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] Length = 238 Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 11/200 (5%) Query: 1 MTTIGLIRHGSTAWNKEGRIQGHTDNPLDEEGLQQAAAIAERLSGEQWDY-IYSSDLLRA 59 +T I L+RHG T WN GRIQG ++ L+E GL+QA AIAERL E+ +YSSDL RA Sbjct: 24 VTEIVLVRHGETTWNAAGRIQGQIESDLNEVGLKQAVAIAERLGKEERPVAVYSSDLKRA 83 Query: 60 VQTAEVISKRLGIPIAGQVPGVREMNGGLIEGT-------TEDERVQRWGSGWKSMDM-- 110 TA +I+K P +VP ++E + G ++G E E + S +++ Sbjct: 84 KDTALMIAKTCFCPEVIEVPDLKERHVGSLQGLYWKEGAEKEPEAYSAFFSSQNDLEIPG 143 Query: 111 GLESDESGQQRGSRAIEEIAARHPGKRILIVSHGAILRSSLRKLVPGLDVGELLKNTSIT 170 G ES + R A+E+IA +H G+R+++V+HG +LR+ ++ G+LL N S+ Sbjct: 144 GGESFDQLADRSMDALEQIAKKHKGERVIVVTHGGVLRAIYLRITQASSAGKLL-NASVN 202 Query: 171 HIVKDNSGWTCALYNCVAHM 190 + + W ++ V+H+ Sbjct: 203 VVHLRDQKWIIDSWSDVSHL 222 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 293,794,793 Number of extensions: 11527326 Number of successful extensions: 25135 Number of sequences better than 1.0e-05: 410 Number of HSP's gapped: 25172 Number of HSP's successfully gapped: 421 Length of query: 194 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 75 Effective length of database: 434,140,797 Effective search space: 32560559775 Effective search space used: 32560559775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 122 (51.6 bits)