BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0003.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_656473.1| ABC_tran, ABC transporter [Bacillus anthracis A... 343 2e-93 ref|NP_832302.1| ABC transporter ATP-binding protein [Bacillus c... 343 2e-93 ref|NP_978927.1| ABC transporter, ATP-binding protein [Bacillus ... 341 8e-93 ref|NP_391843.1| similar to ABC transporter (ATP-binding protein... 323 3e-87 ref|NP_391350.1| similar to ABC transporter (ATP-binding protein... 322 5e-87 >ref|NP_656473.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_844966.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP26452.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 256 Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 161/256 (62%), Positives = 207/256 (80%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M +L +++KVY GKV +AL DI LSI++GEFVGIMGPSGSGKTTLLNMVSTID PSS Sbjct: 1 MEILHAKSISKVYKGKVPYKALVDIDLSIQEGEFVGIMGPSGSGKTTLLNMVSTIDSPSS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G + I G++P+ ++ ++LALFRR+QLGFVFQ FNLL TLTV ENIVLP+TLD + EM+ Sbjct: 61 GEILINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 + +A++LNI DIL+KRT+EISGGQ QRTAIARA++ P ++LADEPTG LDS SS Sbjct: 121 KRVEAIAEKLNITDILSKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VME L+ +N++E T+MLVTHDP AAS+C+R+VFIKDG+L EI+ G++RQAF+QKI+D Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVVFIKDGQLYNEIYCGESRQAFYQKIMDV 240 Query: 244 LSFWGGNSHELSSIRV 259 LS GG H+ SS+R+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >ref|NP_832302.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP09503.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 256 Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 160/256 (62%), Positives = 208/256 (81%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M +L +++KVY GK+ +AL DI LSI++GEFVGIMGPSGSGKTTLLNMVSTID PSS Sbjct: 1 MEILHAKSISKVYKGKIPYKALVDIDLSIQEGEFVGIMGPSGSGKTTLLNMVSTIDSPSS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G + I G++P+ ++ ++LALFRR+QLGFVFQ FNLL TLTV ENIVLP+TLD + EM+ Sbjct: 61 GEILINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVREMN 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 + ++A++LNI DIL+KRT+EISGGQ QRTAIARA++ P ++LADEPTG LDS SS Sbjct: 121 KRVEEIAEKLNITDILSKRTFEISGGQAQRTAIARAIVHKPQLLLADEPTGNLDSKSSND 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VME L+ +N++E T+MLVTHDP AAS+C+R+VFIKDG+L EI+ G++RQAF+QKI+D Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVVFIKDGQLYNEIYCGESRQAFYQKIMDV 240 Query: 244 LSFWGGNSHELSSIRV 259 LS GG H+ SS+R+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >ref|NP_978927.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS41535.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 256 Score = 341 bits (875), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 157/256 (61%), Positives = 206/256 (80%) Query: 4 MNVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSS 63 M +L ++KVY GK+ +AL DI LSI++GEF+GIMGPSGSGKTTLLNMVSTID P+S Sbjct: 1 MEILHAKNISKVYKGKIPFKALVDIDLSIQEGEFIGIMGPSGSGKTTLLNMVSTIDSPTS 60 Query: 64 GVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMD 123 G + I G++P+ ++ ++LALFRR+QLGFVFQ FNLL TLTV ENIVLP+TLD + EM+ Sbjct: 61 GEIVINGTNPFQLSSEDLALFRRKQLGFVFQSFNLLSTLTVKENIVLPMTLDGVSVQEMN 120 Query: 124 ALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRI 183 + ++A++LNI DILNKRT+EISGGQ QRTAIARA++ P ++L DEPTG LDS SS Sbjct: 121 KRVEEIAEKLNITDILNKRTFEISGGQAQRTAIARAIVHKPQLLLVDEPTGNLDSKSSND 180 Query: 184 VMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDT 243 VME L+ +N++E T+MLVTHDP AAS+C+R++FIKDG+L EI+RG++RQ F+QKI+D Sbjct: 181 VMEMLDTLNKEEKATMMLVTHDPYAASFCSRVIFIKDGQLYNEIYRGESRQTFYQKIMDV 240 Query: 244 LSFWGGNSHELSSIRV 259 LS GG H+ SS+R+ Sbjct: 241 LSLLGGKRHDFSSVRI 256 >ref|NP_391843.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P42423|YXDL_BACSU Hypothetical ABC transporter ATP-binding protein yxdL pir||A70074 ABC transporter (ATP-binding protein) homolog yxdL - Bacillus subtilis dbj|BAA03302.1| hypothetical protein [Bacillus subtilis] dbj|BAA08315.1| homologous to FtsE protein of E. coli, belonging to the ATP-binding-cassette (ABC) family [Bacillus subtilis] emb|CAB16000.1| yxdL [Bacillus subtilis subsp. subtilis str. 168] Length = 257 Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 148/255 (58%), Positives = 204/255 (80%) Query: 5 NVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSSG 64 N+LEV +NK Y G+V+ QAL I SIE+GEF +MGPSGSGKTTLLN++STID+P SG Sbjct: 3 NMLEVKHINKTYKGQVSYQALKQISFSIEEGEFTAVMGPSGSGKTTLLNIISTIDRPDSG 62 Query: 65 VVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMDA 124 + I G +P+ + + +LA FRR+QLGFVFQDFNLL+TLT+ ENI+LPLTL+ + M+ Sbjct: 63 DILINGENPHRLKRTKLAHFRRKQLGFVFQDFNLLDTLTIGENIMLPLTLEKEAPSVMEE 122 Query: 125 LLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRIV 184 LH +A +L I+++LNKRT+E+SGGQRQR AIARA+I P++ILADEPTG LDS +++ V Sbjct: 123 KLHGIAAKLGIENLLNKRTFEVSGGQRQRAAIARAVIHKPSLILADEPTGNLDSKATKDV 182 Query: 185 MESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDTL 244 ME+L+ +NR + T ++VTHDP++ASYC R++FIKD L EI+RG+NRQ F+++I+D L Sbjct: 183 METLQSLNRDDHVTALMVTHDPVSASYCRRVIFIKDVVLFNEIYRGENRQVFYEQILDVL 242 Query: 245 SFWGGNSHELSSIRV 259 S GGN+++LSS+R+ Sbjct: 243 SMLGGNANDLSSVRL 257 >ref|NP_391350.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||F70032 ABC transporter (ATP-binding protein) homolog yvcR - Bacillus subtilis emb|CAB08064.1| hypothetical protein [Bacillus subtilis] emb|CAB15475.1| yvcR [Bacillus subtilis subsp. subtilis str. 168] Length = 259 Score = 322 bits (825), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 156/258 (60%), Positives = 198/258 (76%), Gaps = 3/258 (1%) Query: 4 MNVLEVTALNKVY---PGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQ 60 MNVL+ T L+K Y G ++ QAL+ LS+ +GEFVGIMGPSGSGKTTLLN+++TID+ Sbjct: 1 MNVLQTTNLSKTYYSNKGTISYQALSAFDLSVSKGEFVGIMGPSGSGKTTLLNLLATIDK 60 Query: 61 PSSGVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLA 120 P+ G + I G P + +ELALFRRR+LGFVFQDFNLL+TLT+ ENI+LPL LD KL Sbjct: 61 PTQGEMMINGIQPKTLKDQELALFRRRELGFVFQDFNLLDTLTIRENILLPLALDKVKLR 120 Query: 121 EMDALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNS 180 EM+A L ++AD L IK IL+ RTYE+SGGQ+QR A ARA+I +PA+ILADEPTG LDS S Sbjct: 121 EMEARLDELADTLQIKHILDHRTYEVSGGQQQRAACARAIIHNPALILADEPTGNLDSKS 180 Query: 181 SRIVMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKI 240 ++ VM +L +N ++ T++LVTHD AAS+C RIVFIKDGR +EIHRG NRQ F+Q I Sbjct: 181 AKQVMNTLAQLNEEKEATILLVTHDATAASFCKRIVFIKDGRFFSEIHRGTNRQVFYQSI 240 Query: 241 IDTLSFWGGNSHELSSIR 258 +DTLS GG+ HE + R Sbjct: 241 LDTLSVLGGDFHEFENYR 258 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 347,438,433 Number of extensions: 13436804 Number of successful extensions: 115772 Number of sequences better than 1.0e-05: 21822 Number of HSP's gapped: 92100 Number of HSP's successfully gapped: 23305 Length of query: 259 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 136 Effective length of database: 423,280,401 Effective search space: 57566134536 Effective search space used: 57566134536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)