BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0001.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832425.1| Transcriptional regulator, DeoR family [Bacillu... 286 7e-76 ref|NP_656533.1| hypothetical protein predicted by GeneMark [Bac... 279 6e-74 ref|NP_978994.1| conserved hypothetical protein [Bacillus cereus... 268 1e-70 gb|EAJ06865.1| unknown [environmental sequence] 106 7e-22 ref|ZP_00139094.1| COG2378: Predicted transcriptional regulator ... 103 4e-21 >ref|NP_832425.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579] gb|AAP09626.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579] Length = 320 Score = 286 bits (731), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 132/318 (41%), Positives = 203/318 (63%), Gaps = 2/318 (0%) Query: 1 MSKADYMLSILWILQQ-HKRTAAELAGELELSVRSVYRYIDALCASGVPVIADAGPGGGY 59 M K D ML+ILW+L+ K TA +++ +LE+++R+VYRYID + SGVP+I++ G GGY Sbjct: 1 MPKIDNMLAILWMLRSGEKITAKQISEKLEMNIRTVYRYIDTISTSGVPIISEPGHNGGY 60 Query: 60 SLPEHFSAAPLFFDAGERRALVQASAFARGSGYPYEQALDGAIAKLKRYSNAEQLSQMER 119 +L +F APLFFD E+ +L A+ FA +GY +AL+ AI+KL +YSN EQ +++ + Sbjct: 61 TLLNNFIEAPLFFDFEEQTSLFHAAVFAEEAGYYGGEALNRAISKLSKYSNQEQETKINQ 120 Query: 120 HESGLETLHSXX-XXXXXXXXXXXXCTADSLTLEMEYRKGNGGFPSSRCIDPYGLVLWKG 178 H + LE + AD ++++ Y K + R +DPY ++ W Sbjct: 121 HLTSLEVISRLSPLSIETFLKELEQAVADGYSVKILYHKNGEKKLNYRLVDPYRIIYWNN 180 Query: 179 QWYLTGFCHQRQEVRSFRVDRIAGLRRTGAGFIRPASFSAREFLLQSLLPGQNNPAKLTA 238 +WY+ GFCH R ++RSFRVDRI L T F RP +FSAR+F ++SLLP + + + Sbjct: 181 KWYVIGFCHLRNDIRSFRVDRIESLMLTENKFNRPENFSARDFFIKSLLPTIEDKKDIIS 240 Query: 239 VVISAAEDVLNDLCSHWLFGHTLEQRSENTARFLLDEATLYSYTPYFLLPYGKALTIREP 298 +VI+ ++VL D+C HW GH L++R+ N A FLL++ +++Y PY LLPY K++ + EP Sbjct: 241 LVINGDKNVLADICQHWFLGHYLQERTSNQAVFLLEKDMIHTYVPYLLLPYNKSIKVIEP 300 Query: 299 AALKKKLAEVTAELTAYY 316 +LKK+L EV +EL ++ Sbjct: 301 ISLKKRLIEVLSELIKFH 318 >ref|NP_656533.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_845017.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26503.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 320 Score = 279 bits (714), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 130/318 (40%), Positives = 199/318 (62%), Gaps = 2/318 (0%) Query: 1 MSKADYMLSILWILQQHKR-TAAELAGELELSVRSVYRYIDALCASGVPVIADAGPGGGY 59 M K D ML+ILW+L+ K+ TA + + +LE++VR+VYRYID + SGVP+I++ G GGY Sbjct: 1 MPKIDNMLAILWMLRSGKKITAKQTSEKLEINVRTVYRYIDTISTSGVPIISEPGHNGGY 60 Query: 60 SLPEHFSAAPLFFDAGERRALVQASAFARGSGYPYEQALDGAIAKLKRYSNAEQLSQMER 119 +L +F APLFFD E+ +L A+ FA +GY +AL+ AI+KL +YSN EQ +++ + Sbjct: 61 TLLNNFIEAPLFFDFEEQTSLYHAAVFAEEAGYYGGEALNRAISKLSKYSNQEQETKINQ 120 Query: 120 HESGLETLHSXX-XXXXXXXXXXXXCTADSLTLEMEYRKGNGGFPSSRCIDPYGLVLWKG 178 H + LE + AD ++++ Y K + R +DPY ++ W Sbjct: 121 HLTSLEVISRLSPLSIETFLKELEQAVADGYSVKILYHKSGEKQLNYRLVDPYRIIYWNN 180 Query: 179 QWYLTGFCHQRQEVRSFRVDRIAGLRRTGAGFIRPASFSAREFLLQSLLPGQNNPAKLTA 238 +WY+ GFCH R ++RSFRVDRI L +T F +P FSA +F ++SLLP + + + Sbjct: 181 KWYVIGFCHLRNDIRSFRVDRIESLMQTENKFNQPEDFSASDFFIKSLLPTIEDKESIIS 240 Query: 239 VVISAAEDVLNDLCSHWLFGHTLEQRSENTARFLLDEATLYSYTPYFLLPYGKALTIREP 298 +VI+ + VL D+C HW GH L++R+ N A FLLD+ ++ Y PY LLPY K++ + EP Sbjct: 241 LVINGDKSVLADICQHWFLGHYLQERTSNQAVFLLDKDMIHKYVPYLLLPYNKSIKVIEP 300 Query: 299 AALKKKLAEVTAELTAYY 316 +LK ++ EV +EL ++ Sbjct: 301 ISLKNRIIEVLSELIKFH 318 >ref|NP_978994.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41602.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 320 Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 125/318 (39%), Positives = 198/318 (62%), Gaps = 2/318 (0%) Query: 1 MSKADYMLSILWILQQHKR-TAAELAGELELSVRSVYRYIDALCASGVPVIADAGPGGGY 59 M K D ML+ILW+L+ K+ TA +++ +LE+++R+VYRYID + SGVP+I++ G GGY Sbjct: 1 MPKIDNMLAILWMLRSGKKITAKQISEKLEINIRTVYRYIDTISTSGVPIISEPGHNGGY 60 Query: 60 SLPEHFSAAPLFFDAGERRALVQASAFARGSGYPYEQALDGAIAKLKRYSNAEQLSQMER 119 +L +F APLFFD E+ +L A+ FA +GY +AL+ AI+KL +YSN EQ +++ + Sbjct: 61 TLLNNFIEAPLFFDFEEQTSLFHAAVFAEEAGYYGGEALNRAISKLSKYSNQEQETKINQ 120 Query: 120 HESGLETLHSXXXXXXXXXXXXXX-CTADSLTLEMEYRKGNGGFPSSRCIDPYGLVLWKG 178 H + LE + AD ++++ Y K + R ++PY ++ W Sbjct: 121 HLTSLEVISRLTSLSIETFLKELERAVADGYSVKILYHKSGEKQLNYRLVNPYRIIYWNN 180 Query: 179 QWYLTGFCHQRQEVRSFRVDRIAGLRRTGAGFIRPASFSAREFLLQSLLPGQNNPAKLTA 238 +WY+ GFCH R ++R FRVDRI L T F + +FSA +F ++SLL + + + Sbjct: 181 KWYVIGFCHLRNDIRIFRVDRIESLTLTENKFKQLENFSASDFFIKSLLLTIEDKENIIS 240 Query: 239 VVISAAEDVLNDLCSHWLFGHTLEQRSENTARFLLDEATLYSYTPYFLLPYGKALTIREP 298 +VI+ ++VL D+C HW GH L++R+ N A FLL++ ++ Y PY LLPY K++ + EP Sbjct: 241 LVINGDKNVLADICQHWFLGHYLQERTSNQAVFLLEKDIIHKYVPYLLLPYNKSIKVIEP 300 Query: 299 AALKKKLAEVTAELTAYY 316 +LK +L EV +EL ++ Sbjct: 301 ISLKNRLIEVLSELIKFH 318 >gb|EAJ06865.1| unknown [environmental sequence] Length = 306 Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 146/308 (47%), Gaps = 15/308 (4%) Query: 1 MSKADYMLSILWILQQHKRTAAE-LAGELELSVRSVYRYIDALCASGVPVIADAGPGGGY 59 M++ D +L+++ LQ + AE +A LSVR++YR I AL +GVP++A+ G G Y Sbjct: 1 MNRIDRLLALILYLQSRRTCTAEAMADHFGLSVRTIYRDIAALGEAGVPILAETGIG--Y 58 Query: 60 SLPEHFSAAPLFFDAGERRALVQASAFA-RGSGYPYEQALDGAIAKLKRYSNAEQLSQME 118 SL + + P+ F E AL A R + + Y + + A+ K+K E ++E Sbjct: 59 SLMKGYLLPPVNFSEQEAYALSTGVMLAQRMTTHSYNEKMQSALDKIKAVLPNEAKHRLE 118 Query: 119 RHESGLETLHSXXXXXXXXXXXXXXCTADSLTLEMEYRKGNGGFPSSRCIDPYGLVLWKG 178 G+ T + L L +Y+ N SSR ++ GLV + G Sbjct: 119 LLAKGMATPQTDHPLQADLSVLQQAIARQQL-LSFDYQNANQT-QSSREVEAAGLVFYLG 176 Query: 179 QWYLTGFCHQRQEVRSFRVDRIAGLRRTGAGFIRPASFSAREFLLQSLLPGQNNPAKLTA 238 +W+L +C RQ+ R FR DRI L+ F + F+A++F LQS P PA+LTA Sbjct: 177 RWHLIAWCRLRQDYRDFRTDRIQNLQLHSEQFQARSDFNAKDF-LQSGTP----PAQLTA 231 Query: 239 VVISAAEDVLNDLCSHWLFGHTLE-QRSENTARFLLDEATLYSYTPYFLLPYGKALTIRE 297 ++ A + W G T E Q +E L + ++ +LL G A + Sbjct: 232 QILF-AHTAADRARREWWQGITDELQNAEGVVMTL--NCSDWTSLACWLLSLGTAAKVLA 288 Query: 298 PAALKKKL 305 P LK+++ Sbjct: 289 PDELKQEM 296 >ref|ZP_00139094.1| COG2378: Predicted transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 327 Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 109/230 (47%), Gaps = 6/230 (2%) Query: 1 MSKADY-MLSILWILQQHKR-TAAELAGELELSVRSVYRYIDALCASGVPVIADAGPGGG 58 MSK +L++L +LQ H + + +ELA LE+ R++ RYI AL G+P+ A+ G GG Sbjct: 5 MSKPTVRVLALLELLQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGG 64 Query: 59 YSLPEHFSAAPLFFDAGERRALVQASAFARGSGY-PYEQALDGAIAKLKRYSNAEQLSQM 117 Y L F PL F A E A+ R G E AL+ A AKL R ++ Sbjct: 65 YRLVAGFKLPPLMFSAEETLAVSLGLLAVRSLGLGESELALESAQAKLSRVMPDALRRRL 124 Query: 118 E--RHESGLETLHSXXXXXXXXXXXXXXCTADSLTLEMEYRKGNGGFPSSRCIDPYGLVL 175 R + L+ + +E YR G + R +DPYGLV Sbjct: 125 VALRETASLDLARARAGTSVAALATLAEAAQVRARVEFRYRDPQGA-ETLRQLDPYGLVY 183 Query: 176 WKGQWYLTGFCHQRQEVRSFRVDRIAGLRRTGAGFIRPASFSAREFLLQS 225 G WY++GFCH RQ +RSFR+DR+ R F RPA F L +S Sbjct: 184 RNGCWYVSGFCHLRQALRSFRLDRLDAPRMLAERFERPADFDTLRHLRES 233 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 453,513,864 Number of extensions: 17816296 Number of successful extensions: 33794 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 33763 Number of HSP's successfully gapped: 69 Length of query: 319 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 194 Effective length of database: 417,850,203 Effective search space: 81062939382 Effective search space used: 81062939382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)