BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0003.p
         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_268913.1| conserved hypothetical protein, phage associate...   156   2e-37

>ref|NP_268913.1| conserved hypothetical protein, phage associated [Streptococcus
           pyogenes]
 gb|AAK33634.1| conserved hypothetical protein, phage associated [Streptococcus
           pyogenes M1 GAS]
          Length = 131

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 98/132 (74%), Gaps = 4/132 (3%)

Query: 9   EFFMPM-KPPTATHQEKQVAVVDGKPVFYEPDDLKAARAKLTAHLGKHVPQKKYSGVALR 67
           EFF+PM K PT THQ+K+V V++GKP FYEP+ LK AR K T+ L +HVP  K  G  +R
Sbjct: 3   EFFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDG-PIR 61

Query: 68  VTVKWLFPIPEGSKHYDGEWKKTKPDTHNLNKLPFDIMTNLGFWKDDALVASEIIEKFWA 127
           +TVKWLFP  +GS   +G++K TKPDT NL KL  D MT LGFW DDA VASEIIEKFWA
Sbjct: 62  LTVKWLFPKIKGST--NGQYKTTKPDTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWA 119

Query: 128 KLPGIYIKIEEL 139
              GIY+K+EEL
Sbjct: 120 DTVGIYVKVEEL 131


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 238,178,773
Number of extensions: 9643491
Number of successful extensions: 18175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 18183
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 757,237,578
Length adjustment: 100
Effective length of query: 39
Effective length of database: 485,727,678
Effective search space: 18943379442
Effective search space used: 18943379442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)