BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0006.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242731.1| sugar transport system (permease) (binding prot... 393 e-108 ref|NP_815894.1| ABC transporter, permease protein [Enterococcus... 241 9e-63 ref|NP_470102.1| similar to putative sugar ABC transporter, perm... 232 7e-60 ref|NP_464293.1| similar to putative sugar ABC transporter, perm... 232 7e-60 ref|NP_469563.1| similar to sugar ABC transporters, permease pro... 230 3e-59 >ref|NP_242731.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] pir||A83883 sugar transport system (permease) (binding protein dependent transporter) BH1865 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05584.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] Length = 309 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/290 (66%), Positives = 232/290 (80%), Gaps = 4/290 (1%) Query: 2 KRR---EYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKL-V 57 KRR EY W Y FIA PI+GF +FA P+ YS+YVSFTD+ Y PV+ G DNY +L V Sbjct: 20 KRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGADNYYRLFV 79 Query: 58 QDELFWKTLRNTLYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTL 117 D+LF KT+ NT Y+AL IPIGM SLG A ALNQK++GI FRT FFLP +SSV+A+TL Sbjct: 80 TDDLFRKTVFNTFYAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPAVSSVVAITL 139 Query: 118 LWKWIFNDTYGLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQG 177 LW+WIFN +GLLN +L GI GP WLS E+WAMPAMIIQGVW GLGIN++LYLAALQG Sbjct: 140 LWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGINMILYLAALQG 199 Query: 178 VPRSFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNY 237 V + YEAA+IDG N WQ+F HITVP ISPTT +ILIT+ IGALQD+ RF IMTEGGPNY Sbjct: 200 VNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEGGPNY 259 Query: 238 STTTIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHY 287 STTT+VYYLF NAFRYM MG+AS+MAW+LG+IIL +T++NF +++WVHY Sbjct: 260 STTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKWVHY 309 >ref|NP_815894.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81964.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 300 Score = 241 bits (616), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 116/283 (40%), Positives = 182/283 (64%), Gaps = 2/283 (0%) Query: 3 RREYLW-AYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDEL 61 RR+ W A SFIA +GF LF IP+ S+ ++F + + TP F G N+ K++ D+ Sbjct: 14 RRKNTWTALSFIAPNFIGFFLFTLIPVICSLILAFMSWDSFSTPEFVGMKNFTKMIHDDT 73 Query: 62 FWKTLRNT-LYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWK 120 FW +L+ T +Y+ +P+ +ICSLG A LN+KI+G++FFRT FF P ++S++A+ ++W Sbjct: 74 FWISLKQTFIYTIGVVPLTLICSLGLAILLNRKIRGMKFFRTAFFFPYVTSLVAIAVVWN 133 Query: 121 WIFNDTYGLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPR 180 +F+ T G +N L+L P W SS WA+PA+II VW +G ++LYLA LQ VPR Sbjct: 134 MLFHPTMGPINQFLKLFIENPPGWTSSSTWALPAIIIVSVWRFMGYYMILYLAGLQSVPR 193 Query: 181 SFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTT 240 YEAA +DGA W +F ++T+P + PTT ++ I +I + + Q+MT GGP +T Sbjct: 194 ELYEAASMDGAGKWNQFLNVTLPSLRPTTFFVTIMLVINCFKVFDLVQVMTGGGPGRATN 253 Query: 241 TIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRR 283 +VY ++ AF N G+AS++A +L +I+LA+T+ F +++ Sbjct: 254 VLVYEIYNEAFVKFNFGYASAIAMVLFIIVLAITVAQFKWNQH 296 >ref|NP_470102.1| similar to putative sugar ABC transporter, permease protein [Listeria innocua] pir||AH1527 probable sugar ABC transporter, permease protein homolog lin0760 [imported] - Listeria innocua (strain Clip11262) emb|CAC95992.1| lin0760 [Listeria innocua] Length = 296 Score = 232 bits (592), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 112/276 (40%), Positives = 180/276 (65%), Gaps = 1/276 (0%) Query: 9 AYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDELFWKTLRN 68 AY FIA P+L +F +P+ +++VSFTDY +P + G DNY+K+ +D F +L+N Sbjct: 17 AYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDPYFLISLKN 76 Query: 69 TL-YSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWKWIFNDTY 127 T+ Y+AL +P+G++ SLG A +N +G FRT F++P + S +A +W W+ N Y Sbjct: 77 TIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWYWLLNPQY 136 Query: 128 GLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPRSFYEAAE 187 GL+N +L GI GPAWL WAM A+++ VW G N++++LA LQG+P + YEA++ Sbjct: 137 GLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLYEASK 196 Query: 188 IDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTTTIVYYLF 247 I+GA+ W+ FR++T P +S TT + II A Q + + ++T+GGP ST T+VYY++ Sbjct: 197 IEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLVYYIY 256 Query: 248 QNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRR 283 F + MG+AS+++++L LIIL +++N ++ Sbjct: 257 NEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKE 292 >ref|NP_464293.1| similar to putative sugar ABC transporter, permease protein [Listeria monocytogenes EGD-e] pir||AF1170 probable sugar ABC transporter, permease protein homolog lmo0766 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98844.1| lmo0766 [Listeria monocytogenes] Length = 296 Score = 232 bits (591), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 112/276 (40%), Positives = 180/276 (65%), Gaps = 1/276 (0%) Query: 9 AYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDELFWKTLRN 68 AY FIA P+L +F +P+ +++VSFTDY +P + G DNY+K+ +D F +L+N Sbjct: 17 AYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDPYFLISLKN 76 Query: 69 TL-YSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWKWIFNDTY 127 T+ Y+AL +P+G++ SLG A +N +G FRT F++P + S +A +W W+ N Y Sbjct: 77 TIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWYWLLNPQY 136 Query: 128 GLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPRSFYEAAE 187 GL+N +L GI GPAWL WAM A+++ VW G N++++LA LQG+P + YEA++ Sbjct: 137 GLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLYEASK 196 Query: 188 IDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTTTIVYYLF 247 I+GA+ W+ FR++T P +S TT + II A Q + + ++T+GGP ST T+VYY++ Sbjct: 197 IEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLVYYIY 256 Query: 248 QNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRR 283 F + MG+AS+++++L LIIL +++N ++ Sbjct: 257 NEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKE 292 >ref|NP_469563.1| similar to sugar ABC transporters, permease proteins [Listeria innocua] ref|NP_463710.1| similar to sugar ABC transporters, permease proteins [Listeria monocytogenes EGD-e] pir||AC1460 sugar ABC transporters, permease protein homolog lin0218 [imported] - Listeria innocua (strain Clip11262) pir||AD1097 sugar ABC transporters, permease proteins homolog lmo0179 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98394.1| lmo0179 [Listeria monocytogenes] emb|CAC95451.1| lin0218 [Listeria innocua] Length = 292 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/287 (42%), Positives = 186/287 (64%), Gaps = 1/287 (0%) Query: 2 KRREYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDEL 61 +++ W F+ +LGFL+F IP+ S+ +SFTD+ T F G +NY +L D Sbjct: 6 RKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPE 65 Query: 62 FWKTLRNTLYSALS-IPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWK 120 FWK+ RNT+ + +P MI L A LNQKI+ FFR ++FLP I+S +A++L+WK Sbjct: 66 FWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWK 125 Query: 121 WIFNDTYGLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPR 180 W+FN +YGL+N+ L L GI GP WL+ Q AM A+II W +G +VL+L LQ + Sbjct: 126 WLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISP 185 Query: 181 SFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTT 240 S+YEAA +DGA+ ++ IT+P ++PTT ++ I ++I + Q + + IMTEGGP+ +T Sbjct: 186 SYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATM 245 Query: 241 TIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHY 287 T+V ++ +AFRY MG+AS+M+WIL ++I +T++ +RW +Y Sbjct: 246 TLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNKLQKRWSNY 292 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 450,941,889 Number of extensions: 18594135 Number of successful extensions: 63505 Number of sequences better than 1.0e-05: 1393 Number of HSP's gapped: 62012 Number of HSP's successfully gapped: 1395 Length of query: 288 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 164 Effective length of database: 420,565,302 Effective search space: 68972709528 Effective search space used: 68972709528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)