BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0004.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242733.1| BH1867~unknown conserved protein [Bacillus halo... 223 5e-57 ref|NP_822218.1| putative alpha-arabinofuranosidase II [Streptom... 218 2e-55 ref|ZP_00036887.1| COG3940: Predicted beta-xylosidase [Enterococ... 216 7e-55 ref|NP_348156.1| Beta-xylosidase, family 43 glycosyl hydrolase [... 214 2e-54 ref|ZP_00061257.1| COG3940: Predicted beta-xylosidase [Clostridi... 209 6e-53 >ref|NP_242733.1| BH1867~unknown conserved protein [Bacillus halodurans] pir||C83883 probable alpha-N-arabinofuranosidase (EC 3.2.1.55) BH1867 [similarity] - Bacillus halodurans (strain C-125) dbj|BAB05586.1| BH1867~unknown conserved protein [Bacillus halodurans] Length = 327 Score = 223 bits (567), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 168/313 (53%), Gaps = 15/313 (4%) Query: 6 TFRNPIVARAADPWVLRHTDGNYYFMHXXXXXXXXXXXXXXXXXA--QGRKKTIWSPEPN 63 T+RNP + + ADPWV +H DG YYF + K +W Sbjct: 7 TYRNPFIEQRADPWVYKHADGFYYFTGSVPAYDCIELRRAKTLDGLREAEPKVVWRKYDR 66 Query: 64 GRYSYNLWAPEIHHLNGKWYIYF----TANDGGGDESRRICVLENGEADPMEGEWVWKGA 119 G S N+WAPEIH++ GKWYIYF TA G R+ VLEN A+P+EG W+ KG Sbjct: 67 GPMSANIWAPEIHYIEGKWYIYFAAARTAETKAGLFDHRMFVLENESANPLEGSWIEKGQ 126 Query: 120 LPTP--VPGLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPT 177 + T LD T + Y ++ + S +YI M NPWT++G+ V+L+ P Sbjct: 127 IFTKWESFSLDATTFEHKGVRYLVWPQKDPSIEGNSNLYIAEMENPWTIKGEQVMLSKPE 186 Query: 178 LDWEKQGGMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKS 237 DWE G +NEGP + RNG++++ YSAS T Y +G+L E AD ++P+SWTKS Sbjct: 187 FDWEVIG-YKVNEGPAVIKRNGKVFIAYSASAT-DHHYCMGLLWANEEADLLDPASWTKS 244 Query: 238 PVPVFHKSVENGVYATGHNSFTVSPDGEEDWIVYHALPAPGADAG-----LRATCIQRFT 292 P PVF S ENG Y GHNSFTV+ DG+ D +VYHA + R ++ FT Sbjct: 245 PTPVFQTSEENGQYGPGHNSFTVTEDGKHDVLVYHARSYKEIEGDPLYDPNRHARLKLFT 304 Query: 293 WKEDRTPNFGIPV 305 W +D P FG P+ Sbjct: 305 WDKDGFPQFGEPL 317 >ref|NP_822218.1| putative alpha-arabinofuranosidase II [Streptomyces avermitilis MA-4680] dbj|BAC68753.1| putative alpha-arabinofuranosidase II [Streptomyces avermitilis MA-4680] Length = 481 Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 121/310 (39%), Positives = 167/310 (53%), Gaps = 11/310 (3%) Query: 6 TFRNPIVARAADPWVLRHTDGNYYFMHXX--XXXXXXXXXXXXXXXAQGRKKTIWSPEPN 63 TF NP+ + ADP + +HTDG YYF A + TIW+ + Sbjct: 36 TFTNPLAEKRADPHIFKHTDGYYYFTATVPEYDRIVLRRATTLQGLATAPETTIWTKHAS 95 Query: 64 GRYSYNLWAPEIHHLNGKWYIYFTANDGGGDESRRICVLENGEADPMEGEWVWKGALPTP 123 G ++WAPEIH ++GKWY+YF A + R+ VLE+G A+P+ G W KG + TP Sbjct: 96 GVMGAHIWAPEIHFIDGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATP 155 Query: 124 VP--GLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTLDWE 181 V LD T V + +A D ++++I +M+NPWT+ G ++ PTL WE Sbjct: 156 VSSFSLDATTFVVNGVRHLAWAQRNPAEDNNTSLFIAKMANPWTISGTPTEISQPTLSWE 215 Query: 182 KQGGMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSPVPV 241 G +NEGP + G+++L YSAS T +Y LG+L+ SAD + +SWTKS PV Sbjct: 216 TV-GYKVNEGPAVIQHGGKVFLTYSASAT-DANYCLGMLSASASADLLNAASWTKSSQPV 273 Query: 242 FHKSVENGVYATGHNSFTVSPDGEEDWIVYH-----ALPAPGADAGLRATCIQRFTWKED 296 F S G Y GHNSFTVS DG+ D +VYH + + R T +Q+ W D Sbjct: 274 FKTSEATGQYGPGHNSFTVSEDGKSDILVYHDRNYKDISGDPLNDPNRRTRLQKVYWNAD 333 Query: 297 RTPNFGIPVS 306 TPNFGIPV+ Sbjct: 334 GTPNFGIPVA 343 >ref|ZP_00036887.1| COG3940: Predicted beta-xylosidase [Enterococcus faecium] Length = 324 Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 167/312 (53%), Gaps = 15/312 (4%) Query: 7 FRNPIVARAADPWVLRHTDGNYYFMHXX--XXXXXXXXXXXXXXXAQGRKKTIWSPEPNG 64 + NPIV + ADPWV +HTDG YYF +W G Sbjct: 11 YNNPIVRQRADPWVYKHTDGYYYFTGSVPGYQVIELRRAKSLNELEHAASLIVWQAHEEG 70 Query: 65 RYSYNLWAPEIHHLNGKWYIYFTANDGGG--DESR--RICVLENGEADPMEGEWVWKGAL 120 S +WAPE+H++NGKWYIYF A++ DES R+ VLEN DPM +W+ KG + Sbjct: 71 PMSELIWAPEVHYINGKWYIYFAASNHKTIRDESHHHRMFVLENQHIDPMNTDWIEKGQI 130 Query: 121 PTPVP--GLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTL 178 T LDGT + Q +LY+++A S +Y+ M NPWTL+G +LL+ P Sbjct: 131 KTKRETFSLDGTTFSSQGKLYYVWAQQDPEITGNSNLYLSEMDNPWTLKGKQILLSIPEY 190 Query: 179 DWEKQGGMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSP 238 +WEK+G ++NEGP L RNG+I++ YS S T E+YA+G+L +E + + SW K Sbjct: 191 EWEKRG-FSVNEGPAVLTRNGKIFITYSGSAT-DENYAMGLLWADEHKNLLLKESWHKLS 248 Query: 239 VPVFHKSVENGVYATGHNSFTVSPDGEEDWIVYHALPAPGA-----DAGLRATCIQRFTW 293 PVF S +N + GHNSFTVS DG D ++YHA P D R Q FTW Sbjct: 249 EPVFVSSEKNKQFGPGHNSFTVSEDGCFDILIYHARPEKNQKGDPLDNPNRHANAQCFTW 308 Query: 294 KEDRTPNFGIPV 305 E P FG PV Sbjct: 309 NEQGFPEFGEPV 320 >ref|NP_348156.1| Beta-xylosidase, family 43 glycosyl hydrolase [Clostridium acetobutylicum] pir||E97088 beta-xylosidase, family 43 glycosyl hydrolase CAC1529 [imported] - Clostridium acetobutylicum gb|AAK79496.1| Beta-xylosidase, family 43 glycosyl hydrolase [Clostridium acetobutylicum] Length = 327 Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/327 (39%), Positives = 174/327 (53%), Gaps = 21/327 (6%) Query: 4 TETFRNPIVARAADPWVLRHTDGNYYFMHXXXXXXXXXXXXXXXXXAQGRKKT----IWS 59 E NPI+ + ADP + +H DG YYF +G + +W Sbjct: 3 NEKILNPIIIQRADPMIYKHNDGYYYF--TASVPEYDRIEVRKAKTIEGLRNAEPVDVWR 60 Query: 60 PEPNGRYSYNLWAPEIHHLNGKWYIYFTANDGGGDE----SRRICVLENGEADPMEGEWV 115 +G S +WAPEIH +NG WYIYF A E + R+ V++N +P G WV Sbjct: 61 RHESGEMSNLIWAPEIHFINGAWYIYFAAAPDKNIEDDTFNHRMFVIQNENENPFTGNWV 120 Query: 116 WKGALPTP--VPGLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLL 173 KG + T LD T+ E+LY+++A S IYI M NPWTL+ V+L Sbjct: 121 EKGRIKTAWESFSLDATIFEHNEKLYYVWAQQDINIKGHSNIYIAEMENPWTLKTKPVML 180 Query: 174 TAPTLDWEKQGGMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSS 233 T P L+WE +G +NEGP L +NG+I++ YSAS T +Y +G+LT EE+++ ++ +S Sbjct: 181 TKPELEWEIKG-FWVNEGPAVLKKNGKIFITYSASAT-DVNYCIGMLTAEENSNLLDKNS 238 Query: 234 WTKSPVPVFHKSVENGVYATGHNSFTVSPDGEEDWIVYHALP------APGADAGLRATC 287 WTKS PVF S+EN Y GHNSFTVS DG+ D IVYHA P D R T Sbjct: 239 WTKSQTPVFKTSMENHQYGPGHNSFTVSEDGKHDVIVYHARNYTEIKGDPLYDPN-RHTR 297 Query: 288 IQRFTWKEDRTPNFGIPVSADEDIAAP 314 Q W+ED TP+FG+P +I P Sbjct: 298 AQIINWREDGTPDFGVPEVDSLEIETP 324 >ref|ZP_00061257.1| COG3940: Predicted beta-xylosidase [Clostridium thermocellum ATCC 27405] Length = 585 Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 124/308 (40%), Positives = 164/308 (53%), Gaps = 13/308 (4%) Query: 9 NPIVARAADPWVLRHTDGNYYFMHXX--XXXXXXXXXXXXXXXAQGRKKTIWSPEPNGRY 66 NPIV R ADPWV RHTDG YY + KTIW +G Sbjct: 184 NPIVRRRADPWVYRHTDGYYYMTASVPEYDRIELRRSRTLQGLSTATPKTIWRRHSSGIM 243 Query: 67 SYNLWAPEIHHLNGKWYIYFTANDGGGDESRRICVLENGEADPMEGEWVWKGALPT--PV 124 ++WAPEIH ++GKWYIYF+A R+ VLE +++P+ G WV KG L T Sbjct: 244 GGHIWAPEIHFIDGKWYIYFSAGTSTNYFDIRLYVLECSDSNPLTGTWVEKGQLKTNWES 303 Query: 125 PGLDGTVVTVQEQLYFLYAGYGHYPDYGSAIYIMRMSNPWTLEGDHVLLTAPTLDWEKQG 184 LD T Y ++A S IYI +M+ P + G+ V+++ P WEK G Sbjct: 304 FTLDATTFEHNGTRYLVWAQKDPKIASNSNIYIAKMNGPLAITGNQVMISTPEYSWEKIG 363 Query: 185 GMAINEGPVTLHRNGRIYLVYSASTTWSEDYALGILTMEESADPMEPSSWTKSPVPVFHK 244 A+NEGP L +NG+I++ +SAS T +Y +G+LT ++A+ ++P SW KSP PVF Sbjct: 364 -YAVNEGPAVLKKNGKIFITFSASAT-DANYCMGLLTASDTANLLDPKSWHKSPNPVFQS 421 Query: 245 SVENGVYATGHNSFTVSPDGEEDWIVYHALP------APGADAGLRATCIQRFTWKEDRT 298 + G Y GHNSFT SPDG+ D +VYHA P D R T Q W D T Sbjct: 422 NPSTGQYGPGHNSFTTSPDGKVDIMVYHARNYRDITGDPLYDPN-RHTRAQIVNWNADGT 480 Query: 299 PNFGIPVS 306 P+FGIPV+ Sbjct: 481 PDFGIPVA 488 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 562,774,184 Number of extensions: 25523157 Number of successful extensions: 40058 Number of sequences better than 1.0e-05: 54 Number of HSP's gapped: 39866 Number of HSP's successfully gapped: 54 Length of query: 317 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 192 Effective length of database: 417,850,203 Effective search space: 80227238976 Effective search space used: 80227238976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)