BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0040.0002.p
         (41 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_812204.1| beta-glucuronidase [Bacteroides thetaiotaomicro...    63   3e-09
gb|EAA62925.1| hypothetical protein AN3200.2 [Aspergillus nidula...    54   9e-07
gb|EAE05909.1| unknown [environmental sequence]                        54   1e-06
gb|EAC94651.1| unknown [environmental sequence]                        52   3e-06

>ref|NP_812204.1| beta-glucuronidase [Bacteroides thetaiotaomicron VPI-5482]
 gb|AAO78398.1| beta-glucuronidase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 591

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 1   VIQGFCYTQLTDVEQEINGLLTYDRKPKAPVERIRSIIK 39
           +I GFCYTQ +D+EQE NG+ TYDR+PK  +ERIRSI +
Sbjct: 544 IISGFCYTQFSDIEQEKNGIYTYDRQPKFEMERIRSIFE 582


>gb|EAA62925.1| hypothetical protein AN3200.2 [Aspergillus nidulans FGSC A4]
          Length = 645

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 29/35 (82%)

Query: 4   GFCYTQLTDVEQEINGLLTYDRKPKAPVERIRSII 38
           GF YTQLTD+EQE+NGL ++DR+ K P +R+R ++
Sbjct: 596 GFVYTQLTDIEQEVNGLYSFDRREKVPSDRVRKLM 630


>gb|EAE05909.1| unknown [environmental sequence]
          Length = 149

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query: 2   IQGFCYTQLTDVEQEINGLLTYDRKPKAPVERIRSIIK 39
           IQGFCYTQLTDVEQE NG+  YDR  K  V+++ +I K
Sbjct: 100 IQGFCYTQLTDVEQETNGVYLYDRTNKFNVKKLSNIFK 137


>gb|EAC94651.1| unknown [environmental sequence]
          Length = 93

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 30/38 (78%)

Query: 2  IQGFCYTQLTDVEQEINGLLTYDRKPKAPVERIRSIIK 39
          +QG+ +TQLTD++QEINGLL +DR PK P++ ++ I  
Sbjct: 53 LQGYVWTQLTDIQQEINGLLYFDRSPKIPIDTLKKIFS 90


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.141    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 56,008,465
Number of extensions: 1154353
Number of successful extensions: 2398
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2398
Number of HSP's successfully gapped: 4
Length of query: 41
Length of database: 757,237,578
Length adjustment: 15
Effective length of query: 26
Effective length of database: 716,511,093
Effective search space: 18629288418
Effective search space used: 18629288418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)