BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0036.p
         (81 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00097526.1| COG2350: Uncharacterized protein conserved in...    76   3e-13

>ref|ZP_00097526.1| COG2350: Uncharacterized protein conserved in bacteria
          [Desulfitobacterium hafniense]
          Length = 92

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 49/75 (65%)

Query: 2  DIIRAHVKHLQELERSGQLVMCGPFSDSPGGMVXXXXXXXXXXXXXXQRDPYILTGIRSY 61
          +II+ HV++L+EL+  G+LV+CGPF+D PGGMV              Q DP+I +G +S+
Sbjct: 15 EIIKDHVEYLKELKSQGRLVLCGPFTDYPGGMVVLLAEDLAEATSIAQADPFIASGCKSF 74

Query: 62 ELRTWGLSHAGNRHM 76
          E+RT   ++ GN ++
Sbjct: 75 EMRTLAEANEGNNYL 89


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 106,431,091
Number of extensions: 2693419
Number of successful extensions: 5624
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5624
Number of HSP's successfully gapped: 1
Length of query: 81
Length of database: 757,237,578
Length adjustment: 51
Effective length of query: 30
Effective length of database: 618,767,529
Effective search space: 18563025870
Effective search space used: 18563025870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)