BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0035.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242634.1| BH1768~unknown conserved protein in B. subtilis... 159 2e-38 ref|NP_831339.1| hypothetical Cytosolic Protein [Bacillus cereus... 150 1e-35 ref|NP_390101.1| similar to hypothetical proteins from B. subtil... 148 5e-35 ref|NP_978009.1| conserved hypothetical protein [Bacillus cereus... 148 7e-35 ref|ZP_00183070.1| hypothetical protein Exigu154501 [Exiguobacte... 145 3e-34 >ref|NP_242634.1| BH1768~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||H83870 hypothetical protein BH1768 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05487.1| BH1768~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 189 Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 117/179 (65%), Gaps = 1/179 (0%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACE 60 M + +TGY+AHELGIF H+GI YIKKA +++ L+EEGV+W + GQ GV+LWA E Sbjct: 1 MKVITLTGYKAHELGIFSHNHRGITYIKKAFEQQILALIEEGVEWFLISGQLGVELWAAE 60 Query: 61 VVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFR 120 VV++LKQ +P ++L ++T E +W+E + +Y I+ AD+ +++ PY+G Q R Sbjct: 61 VVIKLKQTHPHIQLAVLTPFLEQESQWQEASRKKYHDILEAADFVDSITKRPYEGPAQLR 120 Query: 121 ARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEE 179 +++ L +KSD +L+ YDED GSP ++ E A K ++ Y + L+ +++ IA E+ Sbjct: 121 LKNEYLVQKSDGLLVLYDEDKP-GSPSYYLEVAKKRQQQEPYDIRLITPHDLEWIAQED 178 >ref|NP_831339.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gb|AAP08540.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 184 Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACE 60 M + VTGY+ ELGIF + H G+ IKKAL +L+ VE+G++W+I GQ GV+LWA E Sbjct: 1 MKVIAVTGYKPFELGIFKNDHPGVECIKKALHRKLITFVEDGLEWVIISGQLGVELWAAE 60 Query: 61 VVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFR 120 VV E++ +YP LKL + T EE WKE+ + Y I++ AD+ +++ Y+ QF+ Sbjct: 61 VVFEMQVEYPDLKLAVFTPFLEQEENWKEDNREYYEFILSQADHVDSITKRKYESPEQFK 120 Query: 121 ARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEE 179 ++ KSDA+L YDE+ GSPK+ E A K E +Y Y + ++Q+I +EE Sbjct: 121 LKNQFFIEKSDALLAVYDEEKP-GSPKYIVESAKKKGEIENYHSYFILFSDLQDIIEEE 178 >ref|NP_390101.1| similar to hypothetical proteins from B. subtilis [Bacillus subtilis] sp|P50838|YPSA_BACSU Hypothetical protein ypsA pir||D69941 conserved hypothetical protein ypsA - Bacillus subtilis gb|AAB38471.1| putative emb|CAB14136.1| ypsA [Bacillus subtilis subsp. subtilis str. 168] Length = 180 Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 112/180 (62%), Gaps = 1/180 (0%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACE 60 M L +TGY+ ELGIF + + YIKKA+ NRL+ ++EG++WI+ GQ GV+LWA E Sbjct: 1 MKVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAE 60 Query: 61 VVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFR 120 +L+++YP LK+ +IT E+ WKE + +Y ++A ADY ++++ PY+ QF+ Sbjct: 61 AAYDLQEEYPDLKVAVITPFYEQEKNWKEPNKEQYEAVLAQADYEASLTHRPYESPLQFK 120 Query: 121 ARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEES 180 ++ KSD +LL YD + EGSPK+ A K E+ Y +Y + ++++ +E+S Sbjct: 121 QKNQFFIDKSDGLLLLYDPE-KEGSPKYMLGTAEKRREQDGYPIYFITMDDLRVTVEEDS 179 >ref|NP_978009.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS40617.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 184 Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 109/179 (60%), Gaps = 1/179 (0%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEEGVDWIITPGQYGVDLWACE 60 M + VTGY+ ELGIF + H G+ IKKAL +L VE+G++W+I GQ GV+LWA E Sbjct: 1 MKVIAVTGYKPFELGIFKNDHPGVECIKKALRRKLTAFVEDGLEWVIISGQLGVELWAAE 60 Query: 61 VVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQFR 120 VV E++ +YP LKL + T EE WKE+ + Y I++ AD+ +++ Y+ QF+ Sbjct: 61 VVFEIQVEYPDLKLAVFTPFLEQEEGWKEDNREYYEFILSQADHVDSITKRKYESPEQFK 120 Query: 121 ARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEE 179 ++ KSDA+L YDE+ GSPK+ E A K E +Y Y + ++Q+I +EE Sbjct: 121 LKNQFFIEKSDALLAVYDEEKP-GSPKYIVEAAKKKGEIENYHSYFILFSDLQDIIEEE 178 >ref|ZP_00183070.1| hypothetical protein Exigu154501 [Exiguobacterium sp. 255-15] Length = 186 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 107/181 (59%), Gaps = 2/181 (1%) Query: 1 MTTLLVTGYRAHELGIFDSKHQGIPYIKKALMNRLVPLVEE-GVDWIITPGQYGVDLWAC 59 M + VTGY+ ELGIFD KH GI +K A R++ L+E+ G W IT G +LWAC Sbjct: 1 MNVVAVTGYKPIELGIFDQKHPGINILKAAYRERMIRLIEDMGTTWFITSAAPGCELWAC 60 Query: 60 EVVLELKQQYPGLKLGIITAHAAPEEKWKEEKQNEYRRIVAGADYCGAVSNAPYDGSWQF 119 EVVLELK YP ++LGI+ E KWKE Q +Y ++ AD+ A+S PY+ QF Sbjct: 61 EVVLELKHDYPEIRLGILLPFLEQESKWKEPVQAQYLAVLNQADFVDAISQKPYENPSQF 120 Query: 120 RARDDLLFRKSDAILLFYDEDAAEGSPKFFKERASKLNEEGDYGLYLMHAEEIQNIADEE 179 R + + + +KS +L YDE+ GS K+ ERA E DY L+L+ +++ + E+ Sbjct: 121 RNKTEFMIQKSQGLLSVYDEEHG-GSAKYLVERAKLEMERSDYQLFLITQDDLAMMEQEQ 179 Query: 180 S 180 + Sbjct: 180 N 180 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 300,869,630 Number of extensions: 12684284 Number of successful extensions: 27086 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 27059 Number of HSP's successfully gapped: 25 Length of query: 185 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 67 Effective length of database: 436,855,896 Effective search space: 29269345032 Effective search space used: 29269345032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 122 (51.6 bits)