BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0031.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAB00842.1| maltose-binding protein [Thermoanaerobacterium th... 197 5e-49 ref|NP_693491.1| multiple sugar-binding transport system multipl... 191 2e-47 ref|ZP_00069192.1| COG1653: ABC-type sugar transport system, per... 114 4e-24 ref|NP_359304.1| ABC transporter substrate-binding protein - mul... 108 3e-22 ref|NP_346328.1| sugar ABC transporter, sugar-binding protein [S... 108 3e-22 >gb|AAB00842.1| maltose-binding protein [Thermoanaerobacterium thermosulfurigenes] Length = 446 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 204/396 (51%), Gaps = 27/396 (6%) Query: 49 TVKIFQFKTEIVEGLNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFS 108 T+ IFQFK EI + L + KE+PN+K++++TVGGG DYGAALK KF SG P I++ Sbjct: 54 TLDIFQFKVEIKDALQNAINTYMKENPNVKINLETVGGGQDYGAALKAKFNSGSEPAIYN 113 Query: 109 NGGYAEMALWADKLEDLSDQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKDLFA 168 GG ++A W KL DLSD K +P +T+DGK YG+P +LEG G +YNK +F+ Sbjct: 114 VGGPQDVATWKPKLADLSDTKAAKAALPGTLTGVTQDGKIYGLPFDLEGYGLIYNKQIFS 173 Query: 169 KAGITETPKTITELEAAAKKLQAINVTP--------FGNAYQEWWLLGNQGISVAFAQQD 220 KAGI P +I +A ++ ++ F +E W+ G +S AF + Sbjct: 174 KAGI--DPSSIKTFDALVNAVKTLDSKKKELGIEAVFAFPAKETWVTGLH-LSNAFLSPE 230 Query: 221 NVDEFIKGLNAGTASIVGNPVFKDWSNLLNLTVKYGQKNPLTTDANTHL-ALFAKGETAM 279 + +K N+ T K +++L KY + + D +T + LF G+ AM Sbjct: 231 FDGDVMKAFNSKTVDFKYGDAMK---QMIDLQNKYSVQPTASLDYSTQVEKLFGTGKVAM 287 Query: 280 MQEGNWAQTLVDNITPNM---NIGMFPMPINDNAEKNDKLTVGIPANLVVNKDSAS--KE 334 +Q+GNW ++++ N +IGM P P+ K D G+P VN D + ++ Sbjct: 288 IQQGNWVYPTLESLDKNFAQNDIGMLPYPV--PGYKEDSYPEGVPMYWAVNSDKPADVQK 345 Query: 335 EAKTFLNWLVTSDMGKEYITKKWKFIPALKTIEATPEDIGALGSDVWKYVQDGKVYGLQS 394 AK FL+WL TSD GK+ +T+++KF+PA + LG ++ GK YG Sbjct: 346 AAKDFLDWLYTSDEGKQIVTQQFKFVPAYTGYNSNSIS-DPLGMQLFVAASQGKTYGWVF 404 Query: 395 SKFPDGVTQE-FASVIQELIAGKTDEAGWEKSMQAA 429 +P+ Q + IQ + G W+K + A Sbjct: 405 MGYPNNWGQNVLGADIQLYVNG---SLSWDKVISHA 437 >ref|NP_693491.1| multiple sugar-binding transport system multiple sugar-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14526.1| multiple sugar-binding transport system multiple sugar-binding protein [Oceanobacillus iheyensis HTE831] Length = 432 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/409 (32%), Positives = 217/409 (53%), Gaps = 39/409 (9%) Query: 49 TVKIFQFKTEIVEGLNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFS 108 V IFQFK E E E+ ++E+E+P++K+D+QTVGGG DY A+LK+ FA+G+ P IF+ Sbjct: 41 VVDIFQFKVEFKEQFEEIVKQYEEENPDVKIDVQTVGGGNDYAASLKSSFAAGNEPAIFN 100 Query: 109 NGGYAEMALWADKLEDLSDQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKDLFA 168 GG E+ + D L DLSD + + + +D K G+P + EG GY+YNK++F Sbjct: 101 VGGPTEVEEYRDYLTDLSDTKAAEAALEGTLTGVMEDDKVLGLPYSQEGYGYIYNKEIFE 160 Query: 169 KAGITETPKTITELEAAAKK------------LQAINVTPFGNAYQEWWLLGNQGISVAF 216 +AGI P+ +T EA + L+A+ P +E W++GN + Sbjct: 161 QAGI--NPEELTTYEALEEAFATIDSQKEDLGLEAVMALP----AKELWVMGNHLANTYI 214 Query: 217 AQQDNVDEFIKGLNAGTASIVGNPVFKDWSNLLNLTVKYGQKNPLTTDANTHL-ALFAKG 275 A N D + A AS + + +L+L +Y + L+ D + + LF+ G Sbjct: 215 APDFNND----IMEAYEASTIPFSKADELQRMLDLQNEYSVQPVLSLDYSQQVEQLFSTG 270 Query: 276 ETAMMQEGNWAQTLVDNITPNM---NIGMFPMPINDNAEKNDKLTVGIPANLVVN--KDS 330 + A++Q+GNW V+ + NIGM P+P+ D E +L VG+P VVN K Sbjct: 271 KVAVIQQGNWIYPTVEQMDAEFAENNIGMIPIPV-DGMEG--QLPVGVPQYWVVNSQKGE 327 Query: 331 ASKEEAKTFLNWLVTSDMGKEYITKKWKFIPALKTIEATPEDIGALGSDVWKYVQDGKVY 390 ++ AK FL+WL TSD GK+++ ++KFIPA + + T L +V++Y Q+G Sbjct: 328 EVQQAAKDFLDWLYTSDAGKDFVLDEFKFIPAYEGYD-TERIADPLSQEVYRYSQEGDTI 386 Query: 391 GLQSSKFPDGVTQEFASV-IQELIAGKTDEAGWEKSMQ---AAWDKLKK 435 G P G ++ +V +Q ++G + WE+ ++ A W+ ++ Sbjct: 387 GWVFMASPVGWQEDTMAVNMQRYLSG---DISWEEVIEQSAADWENARQ 432 >ref|ZP_00069192.1| COG1653: ABC-type sugar transport system, periplasmic component [Oenococcus oeni MCW] Length = 428 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 106/407 (26%), Positives = 173/407 (42%), Gaps = 35/407 (8%) Query: 47 VKTVKIFQFKTEIVEGLNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDI 106 V T+ F K E+ G +L +EKEHPN+K+ I TVG G+ ++L+ KF SGDAPD+ Sbjct: 34 VTTINFFNQKPEVAAGYQKLAKLYEKEHPNVKVKITTVGNGSG-ASSLQAKFVSGDAPDV 92 Query: 107 FSNGGYAEMALWADKLEDLSDQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKDL 166 GG ++ + L L+ K ++P YG+P+++EG G+ YNK + Sbjct: 93 VMLGGLPDVDRYRKHLISLNSMSIQKKIVPSLKTGAEIGSTLYGIPVDIEGYGWSYNKQI 152 Query: 167 FAKAGITETP--------KTITELEAAAKKLQAINVTPFGNAYQEWWLLGNQGISVAFAQ 218 F KAGI K + +L + KKL V F G+ ++A Sbjct: 153 FKKAGIDPNSIHNYATFKKAVEKLNSEKKKLGLTAVFGFNG--------GDTTTIASYAA 204 Query: 219 QDNVDEFIKGLNAGTASIVGNPVF-KDWSNLLNLTVKYGQKNPLTTDANTHLA-LFAKGE 276 Q F L S N + K NL KY + L+ + + LF + Sbjct: 205 QFLSQHFKNNLTKAYYSEHLNWKYSKQMRAYTNLIKKYNVQPILSVKYDPSVQDLFFNEK 264 Query: 277 TAMMQEGNWAQTLVDNITPNM---NIGMFPMPINDNAE--KNDKLTVGIPANLVVNKDSA 331 AM+ +GNW +D + +GM P + +N + +GI ++ A Sbjct: 265 VAMIPQGNWIIPTLDEADSSFVKDKLGMLPFYVGNNKQIMTGSSWYIGI-----TDQHPA 319 Query: 332 SKEEAKTFLNWLVTSDMGKEYITKKWKFIPAL--KTIEATPEDIGALGSDVWKYVQDGKV 389 ++ AK F+ WL TS + + + +PA + P+ I L V+ Sbjct: 320 KEKAAKKFVTWLYTSPESQNITVNEMRLVPATINYPLSKLPDPISKL---VYVDGTSKNA 376 Query: 390 YGLQSSKFPDGVTQE-FASVIQELIAGKTDEAGWEKSMQAAWDKLKK 435 + +FP+G TQE +Q A + ++K + +L++ Sbjct: 377 FVPVHKEFPNGFTQEAIGPNMQRYFANRITWKEFQKLTSRQYYQLRQ 423 >ref|NP_359304.1| ABC transporter substrate-binding protein - multiple sugars [Streptococcus pneumoniae R6] pir||F98085 hypothetical protein msmE [imported] - Streptococcus pneumoniae (strain R6) gb|AAL00515.1| ABC transporter substrate-binding protein - multiple sugars [Streptococcus pneumoniae R6] Length = 419 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 19/314 (6%) Query: 49 TVKIFQFKTEIVEGLNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFS 108 T++ F K E+ + L E+ +FEKE+P IK+ + V + G LKT+ +GD PD+ + Sbjct: 35 TIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNV---PNAGEVLKTRVLAGDVPDVVN 91 Query: 109 NGGYA-EMALWADK--LEDLSDQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKD 165 + E+ WA EDLS++ ++K + AE + K Y +P G YNKD Sbjct: 92 IYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYYNKD 151 Query: 166 LFAKAGITETPKTITELEAAAKKLQAINVTPFGNAYQEWWLLG--NQ-GISVAFAQQDNV 222 F + G+ + P+T E E K + A TPFG A + W L NQ + A Sbjct: 152 KFEELGL-KVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEA 210 Query: 223 DEFIKGLNAGTASIVGNPVFKDWSNLLNLTVKYG--QKNPLTTDANTHLALFAKGETAMM 280 +++++ + A + +P+ KD ++++ G QKN + FA+G+ M Sbjct: 211 NQYLR-YSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMT 269 Query: 281 QEGNWAQTLVDNITPNMNIGMFPMPINDNAEKNDKLTVGIPANLVVNKDSASKE--EAKT 338 G+WA T ++ PN IG F +P EK LTVG +L + + +K EA Sbjct: 270 PNGSWAITAINEQKPNFKIGTFMIP---GKEKGQSLTVG-AGDLAWSISATTKHPKEANA 325 Query: 339 FLNWLVTSDMGKEY 352 F+ ++ ++ ++Y Sbjct: 326 FVEYMTRPEVMQKY 339 >ref|NP_346328.1| sugar ABC transporter, sugar-binding protein [Streptococcus pneumoniae TIGR4] pir||G95221 sugar ABC transporter, sugar-binding protein SP1897 [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK75968.1| sugar ABC transporter, sugar-binding protein [Streptococcus pneumoniae TIGR4] Length = 419 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 19/314 (6%) Query: 49 TVKIFQFKTEIVEGLNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFS 108 T++ F K E+ + L E+ +FEKE+P IK+ + V + G LKT+ +GD PD+ + Sbjct: 35 TIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNV---PNAGEVLKTRVLAGDVPDVVN 91 Query: 109 NGGYA-EMALWADK--LEDLSDQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKD 165 + E+ WA EDLS++ ++K + AE + K Y +P G YNKD Sbjct: 92 IYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYYNKD 151 Query: 166 LFAKAGITETPKTITELEAAAKKLQAINVTPFGNAYQEWWLLG--NQ-GISVAFAQQDNV 222 F + G+ + P+T E E K + A TPFG A + W L NQ + A Sbjct: 152 KFEELGL-KVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEA 210 Query: 223 DEFIKGLNAGTASIVGNPVFKDWSNLLNLTVKYG--QKNPLTTDANTHLALFAKGETAMM 280 +++++ + A + +P+ KD ++++ G QKN + FA+G+ M Sbjct: 211 NQYLR-YSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMT 269 Query: 281 QEGNWAQTLVDNITPNMNIGMFPMPINDNAEKNDKLTVGIPANLVVNKDSASKE--EAKT 338 G+WA T ++ PN IG F +P EK LTVG +L + + +K EA Sbjct: 270 PNGSWAITAINEQKPNFKIGTFMIP---GKEKGQSLTVG-AGDLAWSISATTKHPKEANA 325 Query: 339 FLNWLVTSDMGKEY 352 F+ ++ ++ ++Y Sbjct: 326 FVEYMTRPEVMQKY 339 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 616,802,628 Number of extensions: 26925999 Number of successful extensions: 51380 Number of sequences better than 1.0e-05: 193 Number of HSP's gapped: 51405 Number of HSP's successfully gapped: 194 Length of query: 435 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 306 Effective length of database: 406,989,807 Effective search space: 124538880942 Effective search space used: 124538880942 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)