BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0028.p (610 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00181952.1| hypothetical protein Exigu277301 [Exiguobacte... 201 5e-50 ref|ZP_00036695.1| COG2972: Predicted signal transduction protei... 149 2e-34 ref|ZP_00100011.1| COG2972: Predicted signal transduction protei... 148 5e-34 ref|NP_691698.1| hypothetical protein OB0777 [Oceanobacillus ihe... 147 5e-34 ref|NP_244314.1| two-component sensor histidine kinase [Bacillus... 145 3e-33 >ref|ZP_00181952.1| hypothetical protein Exigu277301 [Exiguobacterium sp. 255-15] Length = 286 Score = 201 bits (511), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 121/295 (41%), Positives = 171/295 (57%), Gaps = 19/295 (6%) Query: 318 SFRITAPIKQLTRYMNQVQTGNLEIDIRPAGKDEIGLVTERFRSMMDTINNLILREYRLE 377 + +IT PIKQLT + +V+ G+L DEIGL+ +F+ M+ I+ LI REYRL Sbjct: 9 ALKITKPIKQLTANVWRVEQGDLSAQFVATTNDEIGLLNRQFQRMIQRIDRLIKREYRLA 68 Query: 378 LSNKTNELRALQSQINPHFLNNTLQIIGTLALELKVPQIYALLSALAKMMRYSMYNDEKI 437 L N+TNELRALQSQ+NPHFL N LQ IGT L+ Y ++ L++MMRYSM N++ I Sbjct: 69 LENRTNELRALQSQLNPHFLFNALQSIGTTTLQGDRKIAYRSITGLSQMMRYSMNNEQTI 128 Query: 438 VTVQDELDHVKAYVELQKERFENKFTFRYDMEESLLKALMPKMILQPIVENYFKHGFNLA 497 VT++ E+DH+++Y+ LQ++RF ++F + D+ + +PKMILQP ENYFKH FN Sbjct: 129 VTLKQEVDHLQSYMRLQQQRFPDRFRYIVDVPWHMNSIEIPKMILQPFAENYFKHAFNQQ 188 Query: 498 --RTDGLIEIKAARLATGRMEITVRNNGSSIPAAKLEALREELQHPGRLDIDTLKETDSN 555 T+ + K R ++ I V N+GS + AAKLE+ ID Sbjct: 189 ADATENYLAYK-VRSDGDQLIIQVENSGSVMEAAKLES------------IDQTMRMHRR 235 Query: 556 DSKRDAPGARIGLPNVLARLRLVCGDSALLIVDNDKAGGVIVRLEIDIVVESETI 610 R G IGL N+ RL + G+ A +I+ + GG R+ I I VE E + Sbjct: 236 PEDRQTSG--IGLHNIYERLLIFYGEEASMILQSPAEGG--FRIVIRIPVEQEEL 286 >ref|ZP_00036695.1| COG2972: Predicted signal transduction protein with a C-terminal ATPase domain [Enterococcus faecium] Length = 574 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/281 (31%), Positives = 153/281 (54%), Gaps = 20/281 (7%) Query: 320 RITAPIKQLTRYMNQVQTGNLEIDIRPAGKD-EIGLVTERFRSMMDTINNLILREYRLEL 378 R + + + + M+Q GNLE I + E+ ++ M+D+IN + Y+LE+ Sbjct: 308 RYSQQVSIVMQAMDQTAAGNLETRIDITNTEYELKELSIGINEMLDSINQFVEDIYKLEI 367 Query: 379 SNKTNELRALQSQINPHFLNNTLQIIGTLALELKVPQIYALLSALAKMMRYSMYNDEKIV 438 + +RALQ+QINPHFL NTL+ I A+ ++ ++ A + ++R + N EK + Sbjct: 368 KQQDAHMRALQAQINPHFLYNTLEYIRMYAISEGSEELADVVYAFSALLRNNT-NQEKTI 426 Query: 439 TVQDELDHVKAYVELQKERFENKFTFRYDMEESLLKALMPKMILQPIVENYFKHGFNLAR 498 T+++ELD + YV L + R+ N+ + + ++ L K +PK ++QP+VENYFKHG + R Sbjct: 427 TLKEELDFCEKYVYLYQMRYPNRVAYHFMIDPDLEKIEVPKFVIQPLVENYFKHGIDFTR 486 Query: 499 TDGLIEIKAARLATGRMEITVRNNGSSIPAAKLEALREELQHPGRLDIDTLKETDSNDSK 558 D + +K + R+ I +++NG + +L+ + E+L HP K Sbjct: 487 FDNALSVKVLQEGK-RVRIIIKDNGKGMTEKRLKQIEEKLSHP----------------K 529 Query: 559 RDAPGARIGLPNVLARLRLVCGDSALLIVDNDKAGGVIVRL 599 + G+ IGL NV RLR G S + ++N++ GG+ V + Sbjct: 530 VELHGS-IGLQNVNERLRASFGSSYYMSLENNETGGLTVSI 569 >ref|ZP_00100011.1| COG2972: Predicted signal transduction protein with a C-terminal ATPase domain [Desulfitobacterium hafniense] Length = 577 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 151/612 (24%), Positives = 258/612 (42%), Gaps = 52/612 (8%) Query: 3 WNSIRTKLIVFLLLPTLVCILATMFISYSYTTKSLRTRAVDENTNLLYQGSKNISSFIQD 62 W IRT+++VF L TL + A + TT+ + + + + + +I Sbjct: 8 WG-IRTQILVFYLAATLFIVGAMGLALFFSTTRIVSQEVAKTTATAIDKSGRQLEMYIDQ 66 Query: 63 VNRLSLTIYSDSDFYRQL-EAGYDDMSANIR--IYSSLNYILTSMPDIFQVYLYRVKDSK 119 + LS + +R ++G DD++ + R I + +L + P+I + L +K Sbjct: 67 LKGLSDLLAESPQVHRYFDQSGPDDVAGDERRDIERMIQGMLNTNPEIASIILI---GAK 123 Query: 120 ATLLSHNATPKRWQGIPPYSDSRITDA--YPLSIQSTHISNTYGLNSPIPQLTAEPVFTL 177 L+++ Q + + I D Y ++ ST T V +L Sbjct: 124 GQLITNE------QNLEMHYSGDIQDQEWYQEALGSTMPILTSARMQEFSMDKDNWVISL 177 Query: 178 HRRIERIPSTEALGYLSIDVKLTAFTDIMNQLYEQDKENIYLVDDSGTLVYSHDEAALGK 237 R + + LG L ID+K A I+ + + Y+++ S +VY + + Sbjct: 178 GRELTD-EKKKHLGVLRIDLKYDAIESILKDMSLGQEGYSYILNQSQQVVYHPNPQYFSQ 236 Query: 238 PLKASWYDKPIAEKG--LSQGYFEKDGAVFIYQKIESPGLNWTLVKQIPVSYLFREAKEA 295 K + +G LS+ Y + + +W LV + + R E Sbjct: 237 EEKRLELIDMLEMEGKELSREYK-------LTHRYNLNNSDWVLVGVASLDGVRRMEAEI 289 Query: 296 ARXXXXXXXXXXXXXXXXXXXXSFRITAPIKQLTRYMNQVQTGNLEIDIRPAGKDEIGLV 355 + + PI+QL + M +V+ G+L ++ G EI + Sbjct: 290 IIVLVVLGSVLLLAAFGSSAIYASSVARPIRQLEKAMEEVEKGSLATEVGVVGSAEIASL 349 Query: 356 TERFRSMMDTINNLILREYRLELSNKTNELRALQSQINPHFLNNTLQIIGTLALELKVPQ 415 + F SM+D I L+ E + +EL+ L SQINPHFL NTL I LA + Sbjct: 350 STHFLSMLDRIRELMQEIRNKEQFLRASELKTLYSQINPHFLYNTLDTIVWLAEFGNTER 409 Query: 416 IYALLSALAKMMRYSMYNDEKIVTVQDELDHVKAYVELQKERFENKFTFRYDMEESLLKA 475 + + A+A+ R S+ + TV+DELDHV+ Y+ +QKER+++K ++ E+ L+ Sbjct: 410 VITVSKAMARFFRLSLRGGSETTTVRDELDHVRQYLFIQKERYQDKLSYEIQAEDGLMDI 469 Query: 476 LMPKMILQPIVENYFKHGFNLARTDGLIEIKAARLATGRMEITVRNNGSSIPAAKLEALR 535 +PK++LQP+VEN HG G+I I A + + + V +NG A Sbjct: 470 TIPKILLQPLVENAIYHGLRKMPGGGMIRITARKGEKEDLFLVVEDNGGGFEDA------ 523 Query: 536 EELQHPGRLDIDTLKETDSNDSKRDAPGARIGLPNVLARLRLVCGDSALLIVDNDKAGG- 594 E+ + P RL +GL NV R+RL G+ L + N G Sbjct: 524 EKGKDPLRL-------------------GGVGLKNVAERIRLYYGEDYGLSIANRPGQGA 564 Query: 595 -VIVRLEIDIVV 605 +I+RL+ + V Sbjct: 565 TIILRLKTTLPV 576 >ref|NP_691698.1| hypothetical protein OB0777 [Oceanobacillus iheyensis HTE831] dbj|BAC12733.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 577 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 149/543 (27%), Positives = 250/543 (46%), Gaps = 38/543 (6%) Query: 2 KWNSIRTKLIVFLLLPTLVCILATMFISYSYTTKSLRTRAVDENTNLLYQGSKNISSFIQ 61 KW ++ K I F L + + ++ I Y T +L+ +A++E T L + +N+ + Sbjct: 3 KW-GLKRKFITFFLALMIPILFVSLLIYYQ-TNVALKNQAIEEATERLSRNEQNLLTVFS 60 Query: 62 DVNRLSLTIYSDSDFYRQLEAGYDDM------SANIRIYSSLNYILTSMPDIFQVYLYRV 115 V +S + D +F + + D+M A I + L S P I + L Sbjct: 61 TVEAMSSYMIYDRNFRKIFISQKDEMYQPDYQEAMEVIKGYFTFQLISNPYINSILL--- 117 Query: 116 KDSKATLLSHNATPKRWQGIPPYSDSRITDAYPLSIQSTHI-SNTYGLNSPIPQLTAEPV 174 + L+ H G P + + D + + + SN Y + S + + V Sbjct: 118 EGRDGHLVKH--------GEPVTGNEQELDKVAKEAKGSPVWSNPYQVKSDWNE--DKYV 167 Query: 175 FTLHRRIERIPS-TEALGYLSIDVKLTAFTDIMNQLYEQDKENIY-LVDDSGTLVYSHDE 232 +L R I + + +E +G + I + ++ NQ+ + +++ Y +V D G ++ D Sbjct: 168 ISLTRIINDMNNISEQIGIVRIRLDQA---ELYNQIEVRSQQSDYFIVSDKGEVILHPDV 224 Query: 233 AALGKPLKASWYDKPIAEKGLSQGYFEKDG-AVFIYQKIESPGLNWTLVKQIPVSYLFRE 291 +GK S K I + G+ + Y +DG + + K + NW V I L Sbjct: 225 DLVGKQFPDSGLIKWIVD-GVEKSYSYQDGESHLVVVKNQLTNTNWFSVTAIDEDKL--- 280 Query: 292 AKEAARXXXXXXXXXXXXXXXXXXXXSFRITAPIK---QLTRYMNQVQTGNLEIDIRPAG 348 A++ +F + IK +LT+ QV+TGNL + Sbjct: 281 AEDLTEVRALIGFLIGILFLAGLLFFTFFYHSNIKRILELTKQTKQVETGNLTASVHVDS 340 Query: 349 KDEIGLVTERFRSMMDTINNLILREYRLELSNKTNELRALQSQINPHFLNNTLQIIGTLA 408 DEIG + RF M+ TI I EYRL++ K +EL+ LQ+QINPHFL NTL +I A Sbjct: 341 NDEIGKLGYRFNKMVKTIQKHIDTEYRLKIKQKESELKVLQNQINPHFLYNTLDMIRWNA 400 Query: 409 LELKVPQIYALLSALAKMMRYSMYNDEKIVTVQDELDHVKAYVELQKERFENKFTFRYDM 468 P+ L+ L+K+ R ++ N + +V ++E+++ +AY+ELQK+R K ++ M Sbjct: 401 RLENAPETSQLIERLSKIFRMNLNNGKSLVKFEEEVEYSQAYLELQKKRLGEKLDYQLVM 460 Query: 469 EESLLKALMPKMILQPIVENYFKHGF-NLARTDGLIEIKAARLATGRMEITVRNNGSSIP 527 EE L + K ++QP++EN +HGF NL R G+I I R + I V +NG Sbjct: 461 EEQLKGYYVMKQMIQPLIENSIQHGFKNLPRQ-GIIRIHCYR-DENQAVIDVIDNGWGFN 518 Query: 528 AAK 530 K Sbjct: 519 EHK 521 >ref|NP_244314.1| two-component sensor histidine kinase [Bacillus halodurans] pir||G84080 two-component sensor histidine kinase BH3447 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07166.1| two-component sensor histidine kinase [Bacillus halodurans] Length = 602 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 118/430 (27%), Positives = 192/430 (44%), Gaps = 23/430 (5%) Query: 172 EPVFTLHRRIERIPSTEALGYLSIDVKLTAFTDIMNQLYEQDKENIYLVDDSGTLVYSHD 231 + V T+ R I + E G + ID+KL + + + + +VD G +YS Sbjct: 176 DEVVTVVRAIIDSTTGEEKGVILIDLKLRVIEEAVRDVRLGKSGYLMVVDQKGDPIYS-- 233 Query: 232 EAALGKPLKASWYDKPIAEKGLSQGYF----EKDGAVFIYQKIESPGLNWTLVKQIPVSY 287 P + Y++ + SQ Y E +G + +S WTL+ Sbjct: 234 ------PAPSIMYEQSFDHR-FSQNYGIFTEEVEGERYQLMYQQSAFTGWTLIGVFSTDQ 286 Query: 288 LFREAKEAARXXXXXXXXXXXXXXXXXXXXSFRITAPIKQLTRYMNQVQTGNLEIDIRPA 347 E ++ S+ I+ PI QL M + ++G+L Sbjct: 287 SVEEVQQILFYVVTFVFFVCFVGITASYFLSYTISRPINQLMLAMQKAESGDLTSRYEGE 346 Query: 348 GKDEIGLVTERFRSMMDTINNLILREYRLELSNKTNELRALQSQINPHFLNNTLQIIGTL 407 +DE+G + F +M++ I LI R E + EL +LQ+ I PHFL NTL I + Sbjct: 347 EQDEVGRLGRSFNTMIEQIGKLISLTERQERKKREAELHSLQANIKPHFLYNTLDTIQWM 406 Query: 408 ALELKVPQIYALLSALAKMMRYSMYNDEKIVTVQDELDHVKAYVELQKERFENKFTFRYD 467 A + + L+ AL+K+ R + I+ + DE++H+K Y+++Q R++NK + Sbjct: 407 ARKKNASDVADLVGALSKLFRIGLSKGGTIIPLVDEIEHIKNYLQIQSVRYKNKLNYSLV 466 Query: 468 MEESLLKALMPKMILQPIVENYFKHGFNLARTDGLIEIKAARLATGRMEITVRNNGSSIP 527 M ++ + + K++LQPIVEN HG R GLI I+A R + I +R+NG I Sbjct: 467 MPSNMERLSILKIVLQPIVENAIYHGIKERRGPGLITIEAER-ENDMLIIRIRDNGKGIK 525 Query: 528 AAKLEALREELQHPGRLDIDTLKETDSNDSKRDAPGARIGLPNVLARLRLVCGDSALLIV 587 L+ LR + L++ D +R G GL NV ARLRL G+ + + Sbjct: 526 PETLQQLRTNVNL-------FLEKGDKEGGQRLTKG--YGLINVHARLRLTFGEPYGVKI 576 Query: 588 DNDKAGGVIV 597 D+ G +V Sbjct: 577 DSVFNEGTVV 586 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 828,051,180 Number of extensions: 33590461 Number of successful extensions: 100168 Number of sequences better than 1.0e-05: 183 Number of HSP's gapped: 99986 Number of HSP's successfully gapped: 183 Length of query: 610 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 478 Effective length of database: 398,844,510 Effective search space: 190647675780 Effective search space used: 190647675780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)