BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0016.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00059763.1| COG1802: Transcriptional regulators [Clostrid... 107 2e-22 ref|ZP_00188708.1| hypothetical protein Rxyl006001 [Rubrobacter ... 100 4e-20 ref|NP_624078.1| Transcriptional regulator [Thermoanaerobacter t... 94 2e-18 ref|ZP_00097392.1| COG1802: Transcriptional regulators [Desulfit... 93 4e-18 ref|NP_693769.1| transcriptional regulator [Oceanobacillus iheye... 87 2e-16 >ref|ZP_00059763.1| COG1802: Transcriptional regulators [Clostridium thermocellum ATCC 27405] Length = 230 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 109/194 (56%), Gaps = 1/194 (0%) Query: 14 QIAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGAY 73 ++ +D++ I +L G+ ++E + A+K+ +SRTPVREAIR L +EG V + PRKGA+ Sbjct: 18 EVIFDTLREAIIAGELKPGERLMEVKLAEKMGVSRTPVREAIRKLELEGLVEMLPRKGAH 77 Query: 74 VSVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWKE 133 V+ L+ +D+ + E+ ++G+ LAA + + E + +L + + N N + Sbjct: 78 VAELSVKDIMDVLEVRATLDGLATALAAERITDEEIKELEHVHSQFLNYANKDNLQGSIK 137 Query: 134 YDIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTRFVAG-VNLEKATEEHQFILDAIIAK 192 D+EFH ++R N+ LI L + + + ++ N + +EHQ+IL+AI + Sbjct: 138 KDVEFHELIYRASRNERLIQIANNLREQVQRFRVIYLKDYSNPRELIKEHQYILEAISTR 197 Query: 193 DSEKARHYTQQNWN 206 D A+ Y Q++ N Sbjct: 198 DKAAAQEYAQRHIN 211 >ref|ZP_00188708.1| hypothetical protein Rxyl006001 [Rubrobacter xylanophilus DSM 9941] Length = 244 Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 16/209 (7%) Query: 8 GKQNQAQIAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVY 67 G + A+ A + I + L + E E A++L MSRTPVREA++ L+ EG V + Sbjct: 35 GSGSAAERAAAVLREAILDGTLPPSSWLRETELARELGMSRTPVREALKRLAAEGLVEIT 94 Query: 68 PRKGAYVSVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSN 127 R+ A V+ +T ED+ E Y + E +EG+ A LAA +H+ +L L+ RM + S Sbjct: 95 ARQAAVVARMTLEDILEVYAVRETLEGLAARLAARHRGPDHLRRLEGLLSRMERSEEPSG 154 Query: 128 FHQWKEYDIEFHRTLHRMCPNKLL---IYHVE----KLFHKTYQIQTRFVAGVNLEKATE 180 ++EFHR + N+ L + HVE + T+++ R ++A + Sbjct: 155 LAA---LNLEFHRVIREAARNRYLERFLAHVEFAVRRFGRTTFEVPGRP------QEALD 205 Query: 181 EHQFILDAIIAKDSEKARHYTQQNWNRAR 209 EH+ ++ AI A D+ +A + RAR Sbjct: 206 EHRRLVAAIAAGDAGEAERLAVGHMRRAR 234 >ref|NP_624078.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM25682.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 225 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 107/200 (53%), Gaps = 1/200 (0%) Query: 15 IAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGAYV 74 + +D + I +L G+ ++E + A+KL +SRTPVREAIR L +EG V + PRKGAYV Sbjct: 16 LVFDYMKEAIITGKLKPGERLMEVQLAEKLGVSRTPVREAIRKLELEGLVVMVPRKGAYV 75 Query: 75 SVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWKEY 134 + L A+D+ E+ ++EG+ A LAA + + E V +L +++ + + Sbjct: 76 ADLNAKDLLNVLEVRSSLEGLAASLAAERITDEEVEKLKKIVEEFRIKMEEGDLEALIRL 135 Query: 135 DIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTRFVAGVNLEKAT-EEHQFILDAIIAKD 193 D EFH + N LI + L ++ + +++ K +EH+ I + I +D Sbjct: 136 DKEFHDLIFAASRNDKLIQIMNNLQEHVHRFRVKYITEEKKAKRIYQEHKKIAELIEQRD 195 Query: 194 SEKARHYTQQNWNRARNELV 213 + AR + +++ + + E+V Sbjct: 196 ANGARKWAEKHVHNFQEEVV 215 >ref|ZP_00097392.1| COG1802: Transcriptional regulators [Desulfitobacterium hafniense] Length = 239 Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 109/198 (55%), Gaps = 3/198 (1%) Query: 14 QIAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSVEGFVTVYPRKGAY 73 +I ++S+ I L G+ ++E + A+++ +SRTPVREAIR L +E FV + PRKGAY Sbjct: 18 EIVFESLREAIINGVLEPGERLMEIQLAEEMGVSRTPVREAIRKLELENFVVMIPRKGAY 77 Query: 74 VSVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMNEQKNLSNFHQWKE 133 V+ ++ +DV + +E+ A+EG+ A LAA + + + + ++ + Q+ + Q + Sbjct: 78 VAGVSHKDVADVFEIRSALEGLAAGLAAERATDQEIEEMERFLLYYEGQE--MSLDQMVD 135 Query: 134 YDIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQ-TRFVAGVNLEKATEEHQFILDAIIAK 192 D FH +++ N+ LI + L + + + T L+ A +EH+ I++A+ Sbjct: 136 SDTGFHALVYKASRNERLIQILANLREQIQRFRATSLSVPGRLKNAIDEHRSIVEALARH 195 Query: 193 DSEKARHYTQQNWNRARN 210 D E+A+ + A N Sbjct: 196 DVEEAQTLAMAHIVTAEN 213 >ref|NP_693769.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC14803.1| transcriptional regulator (GntR family) [Oceanobacillus iheyensis HTE831] Length = 219 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 1/209 (0%) Query: 1 VKETVYMGKQNQAQIAYDSILRDIKENQLTQGQPIIEEEYAKKLDMSRTPVREAIRLLSV 60 +++ + M ++ + YD + I + G + E E AK ++S TP++EA RLLS Sbjct: 5 IQKKISMQSRSVRDLIYDYLKEAIINGEYEPGFHLRERELAKAFEVSTTPIKEAFRLLSN 64 Query: 61 EGFVTVYPRKGAYVSVLTAEDVKECYEMMEAVEGMIAYLAAHQPSTEHVNQLTELIGRMN 120 EG V RKG +VS V+E + A+EG+ A AA + + E + QL +I +M Sbjct: 65 EGLVRTLSRKGTFVSDDIMSSVEEIARVRAALEGVAARFAAIKRTDEDLVQLEAIINQMK 124 Query: 121 EQKNLSNFHQWKEYDIEFHRTLHRMCPNKLLIYHVEKLFHKTYQIQTRFVAGVNL-EKAT 179 + +N + E++ EFH+ + + N + VE + I+ + ++ + EKA Sbjct: 125 NSTSENNREKLNEFNSEFHQFIRKCARNGFIFKQVESVHSYDQYIRKKALSNIEEHEKAF 184 Query: 180 EEHQFILDAIIAKDSEKARHYTQQNWNRA 208 +EH I I+ +D++ A +++ R+ Sbjct: 185 KEHYLIYKMIVEQDADGAEKVMREHIIRS 213 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 308,793,735 Number of extensions: 11597805 Number of successful extensions: 33770 Number of sequences better than 1.0e-05: 494 Number of HSP's gapped: 33714 Number of HSP's successfully gapped: 494 Length of query: 221 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 100 Effective length of database: 428,710,599 Effective search space: 42871059900 Effective search space used: 42871059900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)