BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0010.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_841537.1| conserved hypothetical protein [Nitrosomonas eu... 74 2e-12 ref|NP_442659.1| unknown protein [Synechocystis sp. PCC 6803] >g... 61 7e-09 ref|ZP_00117891.1| COG2954: Uncharacterized protein conserved in... 60 2e-08 ref|NP_105425.1| hypothetical protein mll4592 [Mesorhizobium lot... 56 3e-07 gb|EAC09202.1| unknown [environmental sequence] 55 5e-07 >ref|NP_841537.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] emb|CAD85407.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 151 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 18/158 (11%) Query: 4 EIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIE-DGQELRVRKITDLDSGEITYTH 62 EIERKFL+ +P+ G++ + + Q YL D ELR+R+ Y Sbjct: 3 EIERKFLVATFPD-----GELHAV---PLRQGYLTTPTDSIELRLRQQG------TEYFM 48 Query: 63 TFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLVKTRITG-IWNGTTVEIDLYTQL--E 119 T K G+SR+E E I + + A + + KTR +G + +G E+D++ Sbjct: 49 TLKSEGGLSRQEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLSP 108 Query: 120 LTVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSNKTV 157 L ++EVEF S +AA++F+ P WFG++V+ DK+Y NK + Sbjct: 109 LMLVEVEFLSEDAAQAFIPPPWFGEEVTEDKRYKNKAL 146 >ref|NP_442659.1| unknown protein [Synechocystis sp. PCC 6803] pir||S77038 hypothetical protein slr0698 - Synechocystis sp. (strain PCC 6803) dbj|BAA10730.1| slr0698 [Synechocystis sp. PCC 6803] Length = 154 Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 13/155 (8%) Query: 1 MAMEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIEDGQELRVRKITDLDSGEITY 60 MA+EIERKFL+ + R + +G + Q Y+A +D +RVR I G Y Sbjct: 1 MAIEIERKFLVKDDRWRDLAQG-------YLYRQGYIATKDLTTVRVRTI-----GNRAY 48 Query: 61 THTFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLV-KTRITGIWNGTTVEIDLYTQLE 119 G++R E EY I NQ++ + + PL+ K R + G T E+D + Sbjct: 49 LTIKGKNTGMARLEFEYEIPAVDANQILTELCSPPLIEKYRYCLDYQGKTWEVDEFLGDN 108 Query: 120 LTVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSN 154 ++ E + +A E P W GK+V+ D +Y N Sbjct: 109 QGLILAEVELSQADEKISLPPWIGKEVTDDARYYN 143 >ref|ZP_00117891.1| COG2954: Uncharacterized protein conserved in bacteria [Cytophaga hutchinsonii] Length = 157 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 18/162 (11%) Query: 1 MAMEIERKFLLPEYPERLIQEGQVQVLTRHSID---QTYLAIEDGQELRVRKITDLDSGE 57 MA+EIERKFL I + + L++ S D Q YL E G+ +RVR D G Sbjct: 1 MAIEIERKFL--------IDPIKWEALSKPSPDYLIQGYLHTEPGKTIRVRATND--KGF 50 Query: 58 ITYTHTFKDGKGISRKEIEYSISEGLYNQMIEAVKAVPLVKTRITGIWNGTTVEIDLY-- 115 IT G+SR E EY I + +++ + K R + G E+D++ Sbjct: 51 ITIKGK-SSADGLSRSEFEYEIPKAEAIELLSTFTKKTIEKNRYKISFGGNIWEVDVFEG 109 Query: 116 TQLELTVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSNKTV 157 L V EVE +S+E + F P W ++V+ D +Y N + Sbjct: 110 ANAGLIVAEVELESIE--QPFEKPDWVREEVTSDFRYFNSAL 149 >ref|NP_105425.1| hypothetical protein mll4592 [Mesorhizobium loti MAFF303099] dbj|BAB51211.1| hypothetical protein [Mesorhizobium loti] Length = 157 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 1 MAMEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIEDGQELRVRKITDLDSGEITY 60 M E+ERKFL+ R + E +++L Q YLA G+ +R+R I+D S E+T Sbjct: 1 MGKEVERKFLVSSTAWRGLVEADIRIL------QFYLATAPGRTVRIR-ISDGASAELT- 52 Query: 61 THTFKDGKGIS-RKEIEYSISEGLYNQMIEAVKAVPLVKTRITGIWNGTTVEIDLYTQLE 119 K G G+ R E EY I +M++ + KTR G E+D++ Sbjct: 53 ---LKFGSGVRERDEFEYPIPLADALEMLDFAIGRVIEKTRHHVRHRGYLYEVDVFGGAL 109 Query: 120 LTVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSNKTV 157 ++ E ++ E + P W G++V+ ++K+ N ++ Sbjct: 110 AGLVVAELETPEDVPDEMLPDWLGREVTGEQKFYNASL 147 >gb|EAC09202.1| unknown [environmental sequence] Length = 156 Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 19/158 (12%) Query: 1 MAMEIERKFLLPEYPERLIQEGQVQVLTRHSIDQTYLAIEDGQELRVRKITDLDSGEITY 60 M +EIERKFL+ P I ++ + Q Y+ +D Q +RVR + D + Sbjct: 1 MPIEIERKFLVDTIPSHQISRSKI-------VKQGYMVNDDRQVVRVRSMDD------DH 47 Query: 61 THTFK-DGKGISRKEIEYSISEGLYNQMIEAVKAVPLV-KTRITGIWNGTTVEIDLYTQL 118 T K + +G+SR E EY I + M + + ++ KTR + T E+D + Sbjct: 48 FLTIKSNTRGLSRLEFEYQIQKEDAVDMFKHLCGPRIIEKTRHYIETHNHTWEVDEFHGR 107 Query: 119 E--LTVLEVEFDSLEAAESFVAPGWFGKDVSVDKKYSN 154 L V E+E +S E F P W GK+VS D +Y N Sbjct: 108 NEGLIVAEIELES--EDEQFDIPEWVGKEVSDDPRYYN 143 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 234,497,400 Number of extensions: 8782140 Number of successful extensions: 17215 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 17220 Number of HSP's successfully gapped: 19 Length of query: 164 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 48 Effective length of database: 442,286,094 Effective search space: 21229732512 Effective search space used: 21229732512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 121 (51.2 bits)