BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0001.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831937.1| IG hypothetical 18880 [Bacillus cereus ATCC 145... 180 1e-44 ref|NP_978559.1| conserved hypothetical protein [Bacillus cereus... 178 4e-44 ref|NP_656080.1| hypothetical protein predicted by GeneMark [Bac... 177 8e-44 ref|NP_357833.1| Hypothetical protein [Streptococcus pneumoniae ... 122 3e-27 ref|NP_344798.1| conserved hypothetical protein [Streptococcus p... 122 5e-27 >ref|NP_831937.1| IG hypothetical 18880 [Bacillus cereus ATCC 14579] gb|AAP09138.1| IG hypothetical 18880 [Bacillus cereus ATCC 14579] Length = 191 Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 112/179 (62%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 D++R+++ D WMMN+L + L LPD W+CAGFVRSK+WD H + +T + Sbjct: 8 DIIRLIENDEWMMNVLQMAKSLELPDWWICAGFVRSKIWDTLHDYEAKTAMPDVDVIYYD 67 Query: 62 XXXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALG 121 E E+S E +L + ++PWSVKNQARMH VN + PYSSS + +SKFPETATALG Sbjct: 68 SLHQDEIYEQSLETKLMNMDATIPWSVKNQARMHVVNNMPPYSSSVNAISKFPETATALG 127 Query: 122 LAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQLQV 180 + +DE L AP G+ D L L VRP+ HF + + +Y+ RV KNWQ+ W + + Sbjct: 128 VTLDELNNAILTAPCGIGDVLSLQVRPTAHFLESKERLHMYKNRVIKKNWQSKWPNITI 186 >ref|NP_978559.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41167.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 220 Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 110/178 (61%) Query: 3 LLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXXX 62 ++R+++ D WMMN+L + L LPD W+CAGFVRSK+WD H + RT Sbjct: 9 IIRLIENDEWMMNVLQLAKSLELPDWWICAGFVRSKIWDTLHNYEIRTTTPDVDVIYFDP 68 Query: 63 XXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALGL 122 E E+ E +L + S+PWSVKNQARMH VN + PYSSS D +SKFPETATALG+ Sbjct: 69 FRKDEIYEQLLEKKLINLDASIPWSVKNQARMHVVNNMLPYSSSVDAISKFPETATALGV 128 Query: 123 AMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQLQV 180 +DE + L AP G+ D L L VRP+ HF + + IY+ RV KNWQ+ W + + Sbjct: 129 TLDEKNNVILTAPCGIEDVLSLQVRPTAHFLESKERLHIYKNRVIKKNWQSKWPSITI 186 >ref|NP_656080.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844610.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26096.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 191 Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 79/179 (44%), Positives = 111/179 (62%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 D++R+++ D WMMN+L + L LPD W+CAGF+RSK+WD H + +T + Sbjct: 8 DIVRLIENDEWMMNVLQIAKSLELPDWWICAGFIRSKIWDTLHNYEAKTTMPDVDVIYYD 67 Query: 62 XXXXREEVEKSWEAQLRSTAPSVPWSVKNQARMHTVNGLAPYSSSTDGMSKFPETATALG 121 E E+S E +L + ++PWSVKNQARMH VN + PYSSS D +SKFPETAT+LG Sbjct: 68 SLHKDEIYEQSLETKLMNMDAAIPWSVKNQARMHVVNNMPPYSSSVDAISKFPETATSLG 127 Query: 122 LAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQLQV 180 + +DE + L AP + D L L VRP+ HF + + +Y RV KNWQ+ W + + Sbjct: 128 VTLDEKNNVILTAPCRIEDVLSLQVRPTAHFLESKERLHMYNNRVIKKNWQSKWPSITI 186 >ref|NP_357833.1| Hypothetical protein [Streptococcus pneumoniae R6] pir||G97901 hypothetical protein spr0239 [imported] - Streptococcus pneumoniae (strain R6) gb|AAK99043.1| Hypothetical protein [Streptococcus pneumoniae R6] Length = 190 Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 6/180 (3%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 ++L +E+ MM IL +RDL L DSW+ AG VR+ +W++ ++++P Sbjct: 9 EILEAFRENPDMMAILTIIRDLGLKDSWLAAGSVRNFIWNL---LSDKSPFDHETDIDVI 65 Query: 62 XXXXREEVEKSW--EAQLRSTAPSVPWSVKNQARMHTVN-GLAPYSSSTDGMSKFPETAT 118 E++ + +LR P W +KNQ MH + A Y+SS D MSK+PE T Sbjct: 66 FFDPDFSYEETLLLKKKLREDFPQYQWELKNQVYMHQHSPHTASYTSSRDAMSKYPERCT 125 Query: 119 ALGLAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQL 178 A+GL ++E + L P+G+ D L VRP+PHF N +Y+ R++ KNWQ W L Sbjct: 126 AVGLRLNEESDFELYVPYGLEDILNFQVRPTPHFLENEDRMELYQTRLSKKNWQEKWKNL 185 >ref|NP_344798.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] pir||E95030 conserved hypothetical protein SP0260 [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK74438.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 190 Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 6/180 (3%) Query: 2 DLLRVVKEDRWMMNILAAVRDLHLPDSWVCAGFVRSKVWDVQHGFTERTPLGXXXXXXXX 61 ++L +E MM IL +RDL L DSW+ AG VR+ +W++ ++++P Sbjct: 9 EILEAFRESPDMMAILTIIRDLGLKDSWLAAGSVRNFIWNL---LSDKSPFDHETDIDVI 65 Query: 62 XXXXREEVEKSW--EAQLRSTAPSVPWSVKNQARMHTVN-GLAPYSSSTDGMSKFPETAT 118 E++ E +LR P W +KNQ MH + A Y+SS D MSK+PE T Sbjct: 66 FFDPDFSYEETLLLEKKLREDFPQYQWELKNQVYMHQHSPHTASYTSSRDAMSKYPERCT 125 Query: 119 ALGLAMDEYGELRLAAPHGVSDALELTVRPSPHFRANSQLHPIYEARVAGKNWQAVWDQL 178 A+GL ++E + L P+G+ D L VRP+PHF N +Y+ R++ KNWQ W L Sbjct: 126 AVGLRLNEELDFELYVPYGLEDILNFQVRPTPHFLENEDRMELYQTRLSKKNWQEKWKNL 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.130 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 260,423,659 Number of extensions: 8806802 Number of successful extensions: 16254 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 16220 Number of HSP's successfully gapped: 29 Length of query: 186 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 68 Effective length of database: 436,855,896 Effective search space: 29706200928 Effective search space used: 29706200928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)