BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0010.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_104045.1| unknown protein [Mesorhizobium loti MAFF303099]... 269 4e-71 ref|ZP_00123236.1| COG4947: Uncharacterized protein conserved in... 207 2e-52 ref|NP_721689.1| conserved hypothetical protein [Streptococcus m... 201 1e-50 ref|ZP_00018898.1| hypothetical protein [Chloroflexus aurantiacus] 162 8e-39 ref|ZP_00043640.1| COG4947: Uncharacterized protein conserved in... 159 5e-38 >ref|NP_104045.1| unknown protein [Mesorhizobium loti MAFF303099] dbj|BAB49831.1| unknown protein [Mesorhizobium loti] Length = 267 Score = 269 bits (688), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 171/246 (69%) Query: 1 MRISYHKEYSHHLHRDMEYKVYGHAGKPMLVFPTSLGRFYQYEDSGMIQTLSEFIDAGKL 60 M ISYHK +S L RDMEYK YGHAG+P++VFPTS GRFYQ+EDSG + L+EFID G++ Sbjct: 10 MDISYHKHFSGKLGRDMEYKRYGHAGRPVVVFPTSQGRFYQFEDSGGVGALAEFIDTGRI 69 Query: 61 QIWACDTLDEETFFSSHWNHEDKVYRHEQYDKYIMQELIPGILHSSKENNGGSDQKLLIS 120 Q++ D +D E+FF H + ++ RHE Y +Y+ +E +P IL ++ NGG K L S Sbjct: 70 QLFTVDGIDSESFFDKHADTAHRIGRHEAYFRYVREEALPEILSTASAANGGRKLKPLFS 129 Query: 121 GCSMGAYYSASFFFRHPHVFDTLIALSGVYSTYYFFGDYMSETVYLNSPLHYLPNLTDDD 180 GCSMG Y+S++F FR P + +I+LSGVYS FFG + ++ NSPL YLP + D Sbjct: 130 GCSMGGYHSSNFVFRFPELASGVISLSGVYSARDFFGKVLDGDIFYNSPLDYLPGIVDPK 189 Query: 181 YLNAYRSSRIILCVGQGAYEDEMLHETRLLQDLLQRKHIPAQIEYWGHDVDHDWPWWNKQ 240 L ++ R+I C GQGA+E+ ML ETR L+ +L+ K IPA ++YWG DV HDWPWW+KQ Sbjct: 190 LLARLKALRLIFCCGQGAWEERMLVETRQLEQILRDKSIPAWVDYWGGDVSHDWPWWHKQ 249 Query: 241 IHYYVG 246 + Y+ G Sbjct: 250 LVYFFG 255 >ref|ZP_00123236.1| COG4947: Uncharacterized protein conserved in bacteria [Haemophilus somnus 129PT] Length = 250 Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 152/246 (61%), Gaps = 6/246 (2%) Query: 1 MRISYHKEYSHHLHRDMEYKVYGHAGKPMLVFPTSLGRFYQYEDSGMIQTLSEFIDAGKL 60 M +S L R+M + VYGHAGKP++VFP+S G +Y + GMI+ FI+ G + Sbjct: 1 MHFERRSHWSGELGREMHFNVYGHAGKPVIVFPSSGGNQNEYGNFGMIEACRSFIERGLI 60 Query: 61 QIWACDTLDEETFFSSHWNHEDKVYRHEQYDKYIMQELIPGILHSSKENNGGSDQKLLIS 120 + + D+ D E++ + + D H YD+YI+ EL+P I H SK D ++ + Sbjct: 61 KFYTPDSFDNESWLAEWKSGHDMAQAHNAYDRYILNELVPLIRHESK-----WDGAMIAT 115 Query: 121 GCSMGAYYSASFFFRHPHVFDTLIALSGVYSTYYFFGDYMSE-TVYLNSPLHYLPNLTDD 179 GCSMGA+++ +F RHP +FD IALSGVY +F +Y + TVY NSP+ YL N D+ Sbjct: 116 GCSMGAFHTINFALRHPDLFDVAIALSGVYDARFFTHEYHGDSTVYFNSPIDYLWNQHDN 175 Query: 180 DYLNAYRSSRIILCVGQGAYEDEMLHETRLLQDLLQRKHIPAQIEYWGHDVDHDWPWWNK 239 +L YR + I+ VGQGA+E++ + +T+ L++ + K I +YWGHDVDHDWPWW Sbjct: 176 WFLERYRQNHYIVAVGQGAWEEQHIADTKRLEEAFRSKGIEGWFDYWGHDVDHDWPWWRV 235 Query: 240 QIHYYV 245 Q+ +++ Sbjct: 236 QMPFFL 241 >ref|NP_721689.1| conserved hypothetical protein [Streptococcus mutans UA159] gb|AAN58995.1| conserved hypothetical protein [Streptococcus mutans UA159] Length = 234 Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 146/231 (63%), Gaps = 6/231 (2%) Query: 17 MEYKVYGHAGKPMLVFPTSLGRFYQYEDSGMIQTLSEFIDAGKLQIWACDTLDEETFFSS 76 M + VYGHAGKP++VFP+S G +Y D GMI+ FID G ++ + D+LD E++ + Sbjct: 1 MYFNVYGHAGKPIIVFPSSGGSQNEYGDFGMIEACQSFIDRGVVKFYTPDSLDRESWLAE 60 Query: 77 HWNHEDKVYRHEQYDKYIMQELIPGILHSSKENNGGSDQKLLISGCSMGAYYSASFFFRH 136 + D HE YD+YI+ EL+P I + S N ++ +GCSMGA+++ +F RH Sbjct: 61 GKSGHDMALAHEAYDRYIVHELVPLIRYESNWNG-----MMMATGCSMGAFHTVNFSLRH 115 Query: 137 PHVFDTLIALSGVYSTYYFFGDYMSE-TVYLNSPLHYLPNLTDDDYLNAYRSSRIILCVG 195 P +FD +ALSGVY +F G++ + VY NSP+ YL N D +L+ YR +R I+ VG Sbjct: 116 PDLFDISVALSGVYDARFFTGEFYGDPAVYYNSPIDYLWNQEDSWFLDRYRRNRFIVAVG 175 Query: 196 QGAYEDEMLHETRLLQDLLQRKHIPAQIEYWGHDVDHDWPWWNKQIHYYVG 246 QGA+E+ + +T L++ + K IPA ++WG DV HDW WW Q+ Y++G Sbjct: 176 QGAWEEPHIIDTIRLKEAFEAKSIPAWFDFWGSDVAHDWEWWRVQMPYFLG 226 >ref|ZP_00018898.1| hypothetical protein [Chloroflexus aurantiacus] Length = 238 Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 11/247 (4%) Query: 1 MRISYHKEYSHHLHRDMEYKVYGHAGKPMLVFPTSLGRFYQYEDSGMIQTLSEFIDAGKL 60 M+ YH +S L+R ME V+GHAG P+LVFPTS GRFY+YED GM+ LS ++ G + Sbjct: 1 MQRQYHSWHSPALNRTMELLVFGHAGAPVLVFPTSHGRFYEYEDRGMVAALSHHLEQGWI 60 Query: 61 QIWACDTLDEETFFSSHWNHEDKVYRHEQYDKYIMQELIPGILHSSKENNGGSDQKLLIS 120 Q+ D++ E++++ + + +++R EQY+ Y++ E++P + H + + L+ + Sbjct: 61 QLICVDSVYSESWYNYTADTDARIWREEQYEHYLITEVLPLVRHLNP------NPFLIAT 114 Query: 121 GCSMGAYYSASFFFRHPHVFDTLIALSGVYSTYYFFGDYMSETVYLNSPLHYLPNLTDDD 180 GCS GA + F RHP + +I LSG+Y FF Y ++ VY ++P+ ++PNL D Sbjct: 115 GCSFGASEAVVFTLRHPGLVRRVIGLSGLYDLKRFFSTY-TQGVYFHNPVDFVPNLNDQW 173 Query: 181 YLNAYRSSRIILCVGQGAYEDEMLHETRLLQDLLQRKHIPAQIEYWGHDVDHDWPWWNKQ 240 ++ R + IIL G+ +D LL L K I + W HDWP+W + Sbjct: 174 TIDRLRETDIILVTGR---DDPSAWSNELLSSQLWAKGIGNALRIWD-GWYHDWPYWQRM 229 Query: 241 IHYYVGG 247 I Y+GG Sbjct: 230 IVQYIGG 236 >ref|ZP_00043640.1| COG4947: Uncharacterized protein conserved in bacteria [Magnetococcus sp. MC-1] Length = 242 Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 146/252 (57%), Gaps = 17/252 (6%) Query: 1 MRISYHKEYSHHLHRDMEYKVYGHAGKPMLVFPTSLGRFYQYEDSGMIQTLSEFIDAGKL 60 M YH+ YSH L+RDME ++GHAG +L+FPT GRFY+YE+ G++++L+ I+AG+L Sbjct: 1 MNREYHRWYSHRLNRDMELLIFGHAGAKVLIFPTRDGRFYEYENLGLVESLAPKINAGQL 60 Query: 61 QIWACDTLDEETFFSSHWNHEDKVYRHEQYDKYIMQELIPGILHSSKENNGGSDQKLLIS 120 Q++ D+LD E+F+ D+V+RH Q+++Y++ E++P + +K+NN + Sbjct: 61 QLYCVDSLDHESFYCFWCQPSDRVHRHMQFEEYLLNEVLPLM---AKKNNHPCT---ISH 114 Query: 121 GCSMGAYYSASFFFRHPHVFDTLIALSGVY-------STYYFFGDYMSETVYLNSPLHYL 173 GCS+GA+++ +F FR+PH+F ++A SG Y S F + +Y ++P+HYL Sbjct: 115 GCSLGAFHAVNFAFRYPHLFQKVVAFSGRYDLTMGVESFQDLFNGHYDGYIYHHTPVHYL 174 Query: 174 PNLTDDDYLNAYRSSRIILCVGQGAYEDEMLHETRLLQDLLQRKHIPAQIEYWGHDVDHD 233 P L+ + L R I+L +G+ ED L R L LL K + + W H Sbjct: 175 PRLSCEWRLEQLRKMDIVLTIGK---EDPFLGNNRHLSRLLWEKGVWHALHEW-EGRAHR 230 Query: 234 WPWWNKQIHYYV 245 +W + YV Sbjct: 231 GRYWRQMAPIYV 242 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 412,128,388 Number of extensions: 17658778 Number of successful extensions: 38037 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 38025 Number of HSP's successfully gapped: 10 Length of query: 249 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 126 Effective length of database: 423,280,401 Effective search space: 53333330526 Effective search space used: 53333330526 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)