BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0008.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391881.1| similar to transcriptional regulator (MarR fami... 102 4e-21 ref|ZP_00184078.1| hypothetical protein Exigu049201 [Exiguobacte... 102 8e-21 ref|NP_629113.1| putative marR-family transcriptional regulator ... 95 1e-18 ref|NP_824479.1| putative MarR-family transcriptional regulator ... 89 9e-17 ref|NP_602121.1| transcriptional regulator [Corynebacterium glut... 81 1e-14 >ref|NP_391881.1| similar to transcriptional regulator (MarR family) [Bacillus subtilis] sp|P42103|YXAD_BACSU Putative HTH-type transcriptional regulator yxaD pir||D70071 transcription regulator MarR family homolog yxaD - Bacillus subtilis dbj|BAA21583.1| probable transcriptional regulator [Bacillus subtilis] emb|CAB16038.1| yxaD [Bacillus subtilis subsp. subtilis str. 168] Length = 143 Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 77/133 (57%), Gaps = 4/133 (3%) Query: 60 LESLNNELMTLIRRS----SLDKKHGGLDRSTYTLLYHLAHHEKVGVKALAEEFGLDTST 115 +E + EL T IRR+ +K+ G L+RS+Y LL L VK LAE F LD ST Sbjct: 7 VELIEYELTTFIRRAVYLDQSEKRTGNLERSSYLLLRQLDEFGPARVKELAESFKLDIST 66 Query: 116 ISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFADWSPED 175 +SRQ + LEAK R DP DGR S F IT LG + L+ + RLERY ++ +WS ++ Sbjct: 67 LSRQAAALEAKELIYRFSDPSDGRVSLFTITKLGKQLLKADQQKRLERYEQMLKEWSTQE 126 Query: 176 CHTFSGLLARLNR 188 F LL R+N+ Sbjct: 127 KEMFGELLQRMNK 139 >ref|ZP_00184078.1| hypothetical protein Exigu049201 [Exiguobacterium sp. 255-15] Length = 140 Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 1/138 (0%) Query: 57 DKNLESLNNELMTLIRR-SSLDKKHGGLDRSTYTLLYHLAHHEKVGVKALAEEFGLDTST 115 +K+LE++ EL LIRR ++ + LDR++Y LL L H +VGVK LA E LD ST Sbjct: 3 NKSLETIELELAILIRRLTTATADNRNLDRASYLLLRQLLHSGQVGVKTLARELQLDVST 62 Query: 116 ISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFADWSPED 175 +SRQ + L+ K ++ DP DGR+ ++ IT G ++LE R RL + +W ED Sbjct: 63 VSRQAAALDQKKLVEKIKDPTDGRAFFYNITDYGQQELEIYRTARLTSIERLLTNWPDED 122 Query: 176 CHTFSGLLARLNRKLAQR 193 +F LL + N+ L +R Sbjct: 123 TESFGRLLKQFNQALRER 140 >ref|NP_629113.1| putative marR-family transcriptional regulator [Streptomyces coelicolor A3(2)] emb|CAD30947.1| putative marR-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 166 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 51 MDVKKDDKNLESLNNELMTLIRRSSLDKKHG------GLDRSTYTLLYHLAHHEKVGVKA 104 M D LE+L +E+ RR+ + G +DR+ Y LL L +GVKA Sbjct: 3 MTTAGDTGLLETLQHEVALFARRAEQTRLGGVGQVRNSMDRAAYLLLNRLDKEGPMGVKA 62 Query: 105 LAEEFGLDTSTISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERY 164 LA G+D+ST++RQ + L G R P DGR+ +++ G +LEE R+ R + Sbjct: 63 LAASMGIDSSTVTRQVAPLVDTGLVKRTSHPEDGRAVVLQLSPRGVARLEEVRSSRRQLM 122 Query: 165 GEIFADWSPEDCHTFSGLLARLNRKLAQRSADAKGLTEEAEAG 207 E+ DW+P++ TF LLAR N L+ R A + +A +G Sbjct: 123 AELTHDWAPQERETFCALLARFNGALSARMAPSGVSPTDAPSG 165 >ref|NP_824479.1| putative MarR-family transcriptional regulator [Streptomyces avermitilis MA-4680] dbj|BAC71014.1| putative MarR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 166 Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 6/140 (4%) Query: 60 LESLNNELMTLIRRSSLDKKHG------GLDRSTYTLLYHLAHHEKVGVKALAEEFGLDT 113 L++L +E+ RR+ + G +DR+ Y LL L +GVKALA G+D+ Sbjct: 12 LDTLQHEVAVFARRAEQTRLGGVGQVRNSMDRAAYLLLNRLDKEGPMGVKALAASMGIDS 71 Query: 114 STISRQTSVLEAKGYAVRVPDPMDGRSSYFEITLLGTRKLEEARNIRLERYGEIFADWSP 173 ST++RQ + L G R P DGR+ +++ G +LEE R+ R + E+ DW+P Sbjct: 72 STVTRQVAPLVDTGLVKRTSHPEDGRAVVLQLSPRGMSRLEEVRSSRRQLMSELTHDWAP 131 Query: 174 EDCHTFSGLLARLNRKLAQR 193 ++ F+ LL R N L+ R Sbjct: 132 QEREAFTALLTRFNTALSDR 151 >ref|NP_602121.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] dbj|BAC00328.1| Transcriptional regulators [Corynebacterium glutamicum ATCC 13032] emb|CAF20958.1| Bacterial regulatory protein, MarR family [Corynebacterium glutamicum ATCC 13032] Length = 152 Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 59/113 (52%) Query: 81 GGLDRSTYTLLYHLAHHEKVGVKALAEEFGLDTSTISRQTSVLEAKGYAVRVPDPMDGRS 140 G LD S Y LL L + L+ GLD ST++RQT L KG+ R+PDP G + Sbjct: 32 GVLDSSGYNLLTLLQLRGPSTIGELSAITGLDASTLNRQTKALLTKGFVERIPDPDGGIA 91 Query: 141 SYFEITLLGTRKLEEARNIRLERYGEIFADWSPEDCHTFSGLLARLNRKLAQR 193 F T LG L E R E+Y E+ +DW ED TF LL +LN+ + R Sbjct: 92 RKFHPTDLGNELLNEERTSSQEKYAELLSDWPEEDLRTFVKLLEKLNKAVETR 144 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 297,350,196 Number of extensions: 11623673 Number of successful extensions: 34096 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 34116 Number of HSP's successfully gapped: 17 Length of query: 210 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 90 Effective length of database: 431,425,698 Effective search space: 38828312820 Effective search space used: 38828312820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)