BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0006.p (478 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00181079.1| hypothetical protein Mther098301 [Moorella th... 148 2e-34 ref|NP_624109.1| putative membrane protein [Thermoanaerobacter t... 74 8e-12 gb|EAJ03487.1| unknown [environmental sequence] 71 6e-11 gb|AAP49320.1| Uvs077 [uncultured bacterium] 69 3e-10 gb|EAH80246.1| unknown [environmental sequence] 65 3e-09 >ref|ZP_00181079.1| hypothetical protein Mther098301 [Moorella thermoacetica ATCC 39073] Length = 662 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 130/460 (28%), Positives = 205/460 (44%), Gaps = 61/460 (13%) Query: 44 YDVVIIGSEIQGALLAKEAVKAGLKVLMLDPRSKPGGELIQGQMFFLDDVNDNQKRSLVQ 103 YDV+++G + +G A A + G KVL+++ R GG G + F+D L + Sbjct: 91 YDVLVVGGQPEGVAAAIAAARQGAKVLLVEKRDGLGGLFTYGWLNFIDMNYGPHYELLTR 150 Query: 104 GEIKNLLNGYKAGTIRNAADFQKYYNKVMQGIP---------LKSGIVLDR--VDTKETS 152 G + G++ + A+ +K ++ P K I+ D V K Sbjct: 151 GTFQEFYRRVH-GSVFDVAEAKKVLADMVGRYPNLALSLNTSFKEPILEDNKLVGIKAVK 209 Query: 153 SGKMLSALTYHGKDGVKATIQSRYWVENTDYNALSGKLKEARIP---GMETIYNSTVPDY 209 G+ L ++ + AT +N D A +G +P G E I Sbjct: 210 DGR---ELPFYASRVIDAT-------QNADVAAAAG------VPYTVGAEDIGEKD--RR 251 Query: 210 MAATYMLNFKNVDWNLLHQRI---LEDYPLTNVRKKYGPNTYVDWHFATGFSNITNRYAT 266 A T + VDW L + + ++D +++ A GF +I Y Sbjct: 252 QAVTLVFRLGGVDWQALARAVGSQIKDAKISD-------------RAAWGFGSIARGYQP 298 Query: 267 KDRQLRLRGLNASYQKNGQVIINGLLIYDVNPADPKSVESAVRKGKAEAPYILSFLRKNI 326 +LRLRG N + Q +G V IN L I+ V+ S E A++ + E P I FLR ++ Sbjct: 299 STPRLRLRGFNIARQDDGSVFINALQIFGVDGLSAASREEAIKLAQRELPAITDFLRSHM 358 Query: 327 PGFAKAELNGFPEYLYIRDYNRYETKYVLEYTDLMSSRMFWDNVSIGGYSIDLQGTRAIP 386 PGFA A L G LYIR+ + Y L+ D++ +R F D +++G Y +D+Q T Sbjct: 359 PGFAGARLLGAAPELYIRETRHIKALYQLDLNDVLFNRYFPDAIALGSYPVDVQATSPED 418 Query: 387 TGIGFGKPDRYGLPLRSFELKSYDNVLVTGKNVGASIKAYGSARIMPTTALAAQTIGI-- 444 TG +G+P+ Y +P RS + DN+LV G++ G + A GSAR++P G+ Sbjct: 419 TGYVYGRPEVYSIPFRSLVPEKIDNLLVVGRSAGYTHLAAGSARVVPIGMATGDAAGVAA 478 Query: 445 ILGRERSKRLDDLNVE--DFKRIR-------AYLKKDYQI 475 + + +K +L D K I+ AYL KDY I Sbjct: 479 VYSLQVNKNFRELAASPRDIKAIQDKLVKMGAYL-KDYHI 517 >ref|NP_624109.1| putative membrane protein [Thermoanaerobacter tengcongensis] gb|AAM25713.1| putative membrane protein [Thermoanaerobacter tengcongensis] Length = 448 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 9/155 (5%) Query: 284 GQVIINGLLIYDVNPADPKSVESAVRKGKAEAPYILSFLRKNIPGFAKAELNGFPEYLYI 343 G+VI+N + +N D K + G+ +A + +F++K IPGF + L + + Sbjct: 256 GEVIVNMTRVQRLNGTDIKDLTKGEIIGRNQAIELFNFMKKRIPGFENSILISTGPQIGV 315 Query: 344 RDYNRYETKYVLEYTDLMSSRMFWDNVSIGGYSIDLQGTRAIPTGIG-----FGKPDRYG 398 R+ + +Y+L DL+S++ F D ++ GGY +D+ P G G K Y Sbjct: 316 RETRKIIGEYILTAEDLVSNKRFDDCIAKGGYPVDIHS----PEGEGVVYMKLKKGSDYD 371 Query: 399 LPLRSFELKSYDNVLVTGKNVGASIKAYGSARIMP 433 +P RS K DN+LV+G+ + ++ +A + R+ P Sbjct: 372 IPYRSLYSKKVDNLLVSGRCISSTHEANAAIRVSP 406 >gb|EAJ03487.1| unknown [environmental sequence] Length = 184 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 300 DPKSVESAVRKGKAEAPYILSFLRKNIPGFAKAELNGFPEYLYIRDYNRYETKYVLEYTD 359 DP S+ KG+ EA + LRK PG + A L F + IRD + + Y ++ +D Sbjct: 13 DPDSLTRFEMKGRKEAMQAIKALRKFAPGCSNARLRNFGMTIGIRDTRKIDAHYNMKESD 72 Query: 360 LMSSRMFWDNVSIGGYSIDLQGTRAIPTGIGFGKPDRY-GLPLRSFELKSYDNVLVTGKN 418 + + F D++ I ID G +PT RY +P RS K+ N+LV G++ Sbjct: 73 VRNEGRFEDSIGIFPEFIDGYGVLILPT------TGRYMQIPYRSLMPKNISNLLVVGRS 126 Query: 419 VGASIKAYGSARIMPTTALAAQTIGI--ILGRERSKRLDDLNVEDFKR 464 +G A+ S R M + Q GI + + K L D+N+ D ++ Sbjct: 127 IGGDKIAHASNRNMACCVVTGQGGGIAAAISIKNKKNLKDVNLSDVQK 174 >gb|AAP49320.1| Uvs077 [uncultured bacterium] Length = 760 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 4/104 (3%) Query: 344 RDYNRYETKYVLEYTDLMSSRMFWDNVSIGGYSIDLQGTRAI----PTGIGFGKPDRYGL 399 R+ R+E Y+L+ D+++ ++F D VS GG++IDL I P F Y + Sbjct: 304 RESRRFEGHYMLKQQDIVTQQIFDDAVSYGGWAIDLHPAEGIYSDKPACSQFHSKGIYQI 363 Query: 400 PLRSFELKSYDNVLVTGKNVGASIKAYGSARIMPTTALAAQTIG 443 P R F + DN+ + G+ + A+ A+GS R+M T A Q +G Sbjct: 364 PYRCFVSRDIDNLFLAGRIISATHMAFGSTRVMITCAHGGQAVG 407 >gb|EAH80246.1| unknown [environmental sequence] Length = 174 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 8/173 (4%) Query: 300 DPKSVESAVRKGKAEAPYILSFLRKNIPGFAKAELNGFPEYLYIRDYNRYETKYVLEYTD 359 +P + +G+ +A + + L+K PG +A+L F L IRD + + Y + D Sbjct: 3 NPDHLTKGEMEGRRQAMFAIEALKKYNPGCEEAKLRNFGMTLGIRDTRKIDAAYNMTTED 62 Query: 360 LMSSRMFWDNVSIGGYSIDLQGTRAIPTGIGFGKPDRY-GLPLRSFELKSYDNVLVTGKN 418 + + F D++ I ID G +PT RY LP RS K +N+LVTG++ Sbjct: 63 VHNEAEFEDSIGIFPEFIDGYGVLVLPT------TGRYFQLPFRSMLPKGVENLLVTGRS 116 Query: 419 VGASIKAYGSARIMPTTALAAQTIGIILGRERSKRLDDLNVEDFKRIRAYLKK 471 VG ++ + R M A+ Q G+ + D++ D K+++ L K Sbjct: 117 VGGDKGSHAAVRNMMCCAVNGQGAGVAAAVSIQTQ-SDISKVDIKKVQQTLLK 168 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 663,014,022 Number of extensions: 27857325 Number of successful extensions: 76482 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 76496 Number of HSP's successfully gapped: 10 Length of query: 478 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 349 Effective length of database: 406,989,807 Effective search space: 142039442643 Effective search space used: 142039442643 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)