BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0002.p (112 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_830642.1| Transcriptional regulator, MarR family [Bacillu... 183 1e-45 ref|NP_654779.1| DUF24, Protein of unknown function DUF24 [Bacil... 181 3e-45 ref|NP_977252.1| conserved hypothetical protein [Bacillus cereus... 179 2e-44 ref|NP_970400.1| conserved hypothetical protein [Bdellovibrio ba... 108 4e-23 ref|ZP_00073936.1| COG1733: Predicted transcriptional regulators... 104 6e-22 >ref|NP_830642.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] gb|AAP07843.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] Length = 112 Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/112 (79%), Positives = 101/112 (90%) Query: 1 MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60 M+N +PV LTKG PG CPIAKTLDVI TKWTFLIIRDLLIEGT+RFSDL +S++GISPK Sbjct: 1 MNNIDPVELTKGLPGIPCPIAKTLDVISTKWTFLIIRDLLIEGTLRFSDLQKSMDGISPK 60 Query: 61 TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112 TL+LRL+ELES GI+ R VYPEVPPRVEYTLT KG+QLEGIFIELKR+GL+L Sbjct: 61 TLSLRLKELESQGIITRKVYPEVPPRVEYTLTDKGKQLEGIFIELKRFGLSL 112 >ref|NP_654779.1| DUF24, Protein of unknown function DUF24 [Bacillus anthracis A2012] ref|NP_843353.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP24839.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 112 Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 89/112 (79%), Positives = 101/112 (90%) Query: 1 MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60 M+N +PV LTKG PG CPIAKTLDVI TKWTFLIIRDLLIEGT+RFSDL +S++GISPK Sbjct: 1 MNNIDPVELTKGLPGIPCPIAKTLDVIRTKWTFLIIRDLLIEGTLRFSDLQKSMDGISPK 60 Query: 61 TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112 TL+LRL+ELES GI+ R VYPEVPPRVEYTLT KG+QLEGIFIELKR+GL+L Sbjct: 61 TLSLRLKELESQGIITRKVYPEVPPRVEYTLTDKGKQLEGIFIELKRFGLSL 112 >ref|NP_977252.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39860.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 112 Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/112 (78%), Positives = 100/112 (89%) Query: 1 MDNTEPVILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPK 60 M+N + V LTKG PG CPIAKTLDVI TKWTFLIIRDLLIEGT+RFSDL +S++GISPK Sbjct: 1 MNNIDSVELTKGLPGIPCPIAKTLDVIRTKWTFLIIRDLLIEGTLRFSDLQKSMDGISPK 60 Query: 61 TLALRLRELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYGLAL 112 TL+LRL+ELES GI+ R VYPEVPPRVEYTLT KG+QLEGIFIELKR+GL+L Sbjct: 61 TLSLRLKELESQGIITRKVYPEVPPRVEYTLTDKGKQLEGIFIELKRFGLSL 112 >ref|NP_970400.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] emb|CAE81054.1| conserved hypothetical protein [Bdellovibrio bacteriovorus] Length = 106 Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 52/101 (51%), Positives = 68/101 (67%) Query: 9 LTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPKTLALRLRE 68 + K EACP+ KT ++ KWT LI RDLL +RF++L RSL ISPKTL RL E Sbjct: 1 MAKSKSLEACPVYKTAMILDGKWTILIFRDLLANKVVRFNELRRSLGSISPKTLTERLTE 60 Query: 69 LESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYG 109 LE G++ R VY EVPPRVEY+LT+KG+ L +F + ++G Sbjct: 61 LEDQGLVSRKVYAEVPPRVEYSLTEKGKGLSAVFDSMAKFG 101 >ref|ZP_00073936.1| COG1733: Predicted transcriptional regulators [Trichodesmium erythraeum IMS101] Length = 118 Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 1/95 (1%) Query: 15 GEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPKTLALRLRELESHGI 74 +CPI L ++G KW+ LI+R+LL G R +LL +L+GIS KTL LRLRE E HG+ Sbjct: 10 SNSCPIQFALGILGCKWSVLILRELL-SGDRRTHELLEALQGISSKTLMLRLREFEKHGL 68 Query: 75 LMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYG 109 L R YPEVPP VEY+LT+KG Q++ + I LK+ G Sbjct: 69 LARRAYPEVPPHVEYSLTEKGLQIQPVIIALKQLG 103 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.142 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 161,290,962 Number of extensions: 5466712 Number of successful extensions: 13833 Number of sequences better than 1.0e-05: 328 Number of HSP's gapped: 13652 Number of HSP's successfully gapped: 329 Length of query: 112 Length of database: 757,237,578 Length adjustment: 78 Effective length of query: 34 Effective length of database: 545,459,856 Effective search space: 18545635104 Effective search space used: 18545635104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)