BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0001.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243536.1| BH2670~unknown conserved protein in others [Bac... 102 2e-20 ref|NP_693513.1| hypothetical protein OB2592 [Oceanobacillus ihe... 89 1e-16 ref|NP_464358.1| lmo0831 [Listeria monocytogenes EGD-e] >gi|2551... 80 5e-14 ref|ZP_00019750.1| hypothetical protein [Chloroflexus aurantiacus] 78 3e-13 ref|NP_470168.1| lin0826 [Listeria innocua] >gi|25514058|pir||AB... 77 4e-13 >ref|NP_243536.1| BH2670~unknown conserved protein in others [Bacillus halodurans] pir||F83983 hypothetical protein BH2670 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06389.1| BH2670~unknown conserved protein in others [Bacillus halodurans] Length = 298 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 14/307 (4%) Query: 6 LSTLVEVIVPLSIPVISGALLGRYKNLDTKPLLTLYLYFLSPAIILDTLATAEISFGDVY 65 ++ +V++P+ + G ++ +++++D KP+ T+ +Y L+P+++ T AE++ +Y Sbjct: 1 MTIFFQVVLPVILVFFIGFIVQKWRDVDIKPISTVAVYILTPSLVFRTFYEAELNLQYLY 60 Query: 66 KTLAFSXXXXXXXXXXXXXXGRVLK-LAPAEAAGLTLISTFTNSVNYGLPLVLLAFGQLG 124 L VL+ + A +GL L + F NS NYG P++L A+G G Sbjct: 61 MFLFAMLLLFALIAINKVYA--VLRGYSQATESGLVLSTAFMNSGNYGAPIILFAYGNTG 118 Query: 125 LDKASVYVIAQMVIVNTIGVYFAARSQFSAGSAVRSVFSXXXXXXXXXXXXXXXXXXHMP 184 A +++ Q VI+N GVY+AAR + A+R+V +P Sbjct: 119 FAFAVSFMVLQSVIMNFFGVYYAARGKAGVRMAIRAVMQMPATYAVIVALALQAIPVEIP 178 Query: 185 QEIASGVSMVAGAYSPVVLAILGVQMVRVQTAQVARNVQLAFWT----GMSVRXXXXXXX 240 V ++A A P V+ ILG+Q+ ++ W+ G +R Sbjct: 179 ANFLMTVDIIAEAAVPTVMIILGMQLAMIKWEHFD-------WSKITYGTILRLIVSPLI 231 Query: 241 XXXXXXXXNISGTLFAVLLILASMPVAVNSVVLAERFGSSPALVSRCILWTTLASFLVLP 300 L VL++ A+MP A V+ A +F + P LV+ L TTL S + + Sbjct: 232 AFGITLVFPFDPLLAKVLIVSAAMPSAATIVMYAVQFQAEPRLVTSITLITTLFSVVTIT 291 Query: 301 ILISIVG 307 +L++I+G Sbjct: 292 VLLAILG 298 >ref|NP_693513.1| hypothetical protein OB2592 [Oceanobacillus iheyensis HTE831] dbj|BAC14548.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 298 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 4/301 (1%) Query: 6 LSTLVEVIVPLSIPVISGALLGRYKNLDTKPLLTLYLYFLSPAIILDTLATAEISFGDVY 65 +S +EVI+P+ SG +L R + LD K + + LY L+PA++ TL A G V Sbjct: 1 MSLFIEVIMPIMAVFASGFILQRIRLLDVKSVSAVCLYILTPALVFVTLYDATFDSGFVI 60 Query: 66 KTLAFSXXXXXXXXXXXXXXGRVLKLAPAEAAGLTLISTFTNSVNYGLPLVLLAFGQLGL 125 + + ++ + + L + F NS NYGLP+VL + G + Sbjct: 61 IVI-YMFALFFIMVFINKVLAKLFGWNSNKESAAILATGFMNSGNYGLPVVLFSIGPAAV 119 Query: 126 DKASVYVIAQMVIVNTIGVYFAARSQFSAGSAVRSVFSXXXXXXXXXXXXXXXXXXHMPQ 185 A ++ Q + N GVY+A+RS A+++V +P Sbjct: 120 PYAIFIMVVQALQNNFFGVYYASRSTSGMKKAMKNVLKMPTTYAAVFAFICSWLSITIPD 179 Query: 186 EIASGVSMVAGAYSPVVLAILGVQMVRVQTAQVARNVQLAFWTGMSVRXXXXXXXXXXXX 245 I S ++MV A PV++ +LG+Q+ + ++ V + + +S++ Sbjct: 180 FIHSTLTMVGDAAIPVMMIMLGMQLGSLIGLKLDWQVVV---SSVSLKMIIAPLIAWLFV 236 Query: 246 XXXNISGTLFAVLLILASMPVAVNSVVLAERFGSSPALVSRCILWTTLASFLVLPILISI 305 ++ + VL+I+++MP A + + A F + P LVS +T+ S + L IL++I Sbjct: 237 SIIDVDPLIATVLIIISAMPTAATTTMYAIEFDTEPELVSSITFISTIVSVITLTILLNI 296 Query: 306 V 306 + Sbjct: 297 I 297 >ref|NP_464358.1| lmo0831 [Listeria monocytogenes EGD-e] pir||AG1178 hypothetical protein lmo0831 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98909.1| lmo0831 [Listeria monocytogenes] Length = 303 Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 8/219 (3%) Query: 95 EAAGLTLISTFTNSVNYGLPLVLLAFGQLGLDKASVYVIAQMVIVNTIGVYFAARSQFSA 154 + L L S F N+ NYG P+VLL FG +GLD A V ++ Q + ++TIG+YFAA+ A Sbjct: 88 DRCALILASAFMNNGNYGTPVVLLVFGAVGLDIAVVLMVLQQLAMSTIGIYFAAKGSKDA 147 Query: 155 G---SAVRSVFSXXXXXXXXXXXXXXXXXXHMPQEIASGVSMVAGAYSPVVLAILGVQMV 211 + ++ V +P + + V +V A P ++ +LG+Q+ Sbjct: 148 NGMKTVMKRVVRMPIAYGALLGLALQLLHVSLPSALMTCVKLVGDAAIPTIMIVLGMQLA 207 Query: 212 RVQTAQVARNVQLA-FWTGMSVRXXXXXXXXXXXXXXXNISGTLFAVLLILASMPVAVNS 270 + R ++L + ++ + ++++LA+MP A N+ Sbjct: 208 VIS----FRRIELTKVGIALVLKLLIAPIIAFGLTLILPVDEMTKQIMILLAAMPTAANT 263 Query: 271 VVLAERFGSSPALVSRCILWTTLASFLVLPILISIVGSV 309 ++A +F + P LVS +T+ S + LPI++ + V Sbjct: 264 TLMAVQFDTKPDLVSSATFISTVLSIITLPIVLYFLHPV 302 >ref|ZP_00019750.1| hypothetical protein [Chloroflexus aurantiacus] Length = 310 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 126/290 (43%), Gaps = 15/290 (5%) Query: 5 VLSTLVEVIVPLSIPVISGALLGRYKNLDTKPLLTLYLYFLSPAIILDTLATAEISFGDV 64 +++ LV+V++P+++ +G L R LD L L +Y LSPA+I L A++S D Sbjct: 1 MIAVLVDVLLPIAVVASAGFALRRALPLDLMTLNRLMIYGLSPALIFVALLRADLSGPDA 60 Query: 65 YKTLAFSXXXXXXXXXXXXXXGRVLKLAPAEAAGLTLISTFTNSVNYGLPLVLLAFGQLG 124 + L FS L+L E L L S F NS NYGLP AFG+ G Sbjct: 61 GRMLFFSVGVIGLMAITVWLSAMALRLRGKEVTALLLTSMFMNSGNYGLPASRFAFGETG 120 Query: 125 LDKASVYVIAQMVIVNTIGVYFAA-----------RSQFSAGSAVRSVFSXXXXXXXXXX 173 Y I Q ++ T+GV AA R + + +++ Sbjct: 121 FTLGVFYFIMQSIMAQTLGVGVAAAGAAGGGRRAWRQVGNRLLHMPQIYAVAGALLLRGL 180 Query: 174 XXXXXXXXHMPQEIASGVSMVAGAYSPVVLAILGVQMVRVQTAQVARNVQLAFWTGMSVR 233 + + + GV++++ A PV+L ILGVQ+ A + + +AF T ++R Sbjct: 181 GFHPATATGVARSLFEGVALLSEAALPVMLLILGVQL--GAGAPIVQPTMVAFAT--AIR 236 Query: 234 XXXXXXXXXXXXXXXNISGTLFAVLLILASMPVAVNSVVLAERFGSSPAL 283 + G V +++A MP AVN+ +LA F + P L Sbjct: 237 LVVSPILAFGLGRLLGMDGVALGVGVMMAGMPTAVNTTILAIEFDTRPQL 286 >ref|NP_470168.1| lin0826 [Listeria innocua] pir||AB1536 hypothetical protein lin0826 [imported] - Listeria innocua (strain Clip11262) emb|CAC96058.1| lin0826 [Listeria innocua] Length = 303 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 9/283 (3%) Query: 31 NLDTKPLLTLYLYFLSPAIILDTLATAEISFGDVYKTLAFSXXXXXXXXXXXXXXGRVLK 90 D L L LY +SP + +T T ++ D + + +L Sbjct: 25 KFDIPNLSKLTLYLMSPFLAFNTFYTNPLTM-DYFYLAIYIFVLCLSLILLVSVISFLLG 83 Query: 91 LAPAEAAGLTLISTFTNSVNYGLPLVLLAFGQLGLDKASVYVIAQMVIVNTIGVYFAARS 150 + L L S F N+ NYG P+VLL FG GLD A V ++ Q + ++TIG+YFAA+ Sbjct: 84 YNVQDRCALILASAFMNNGNYGTPVVLLVFGAAGLDIAVVLMVLQQLAMSTIGIYFAAKG 143 Query: 151 QFSAG---SAVRSVFSXXXXXXXXXXXXXXXXXXHMPQEIASGVSMVAGAYSPVVLAILG 207 A + + V +P + + V +V A P ++ +LG Sbjct: 144 SKDANGMKTVMTRVVRMPIAYGALLGLMLQLLHIPLPSALMTCVKLVGDAAIPTIMIVLG 203 Query: 208 VQMVRVQTAQVARNVQL-AFWTGMSVRXXXXXXXXXXXXXXXNISGTLFAVLLILASMPV 266 +Q+ + R ++L + ++ + ++++LA+MP Sbjct: 204 MQLAVIS----FRRIELDKVGIALVLKLLIAPFIAFGLTLILPVDEMTKQIMILLAAMPT 259 Query: 267 AVNSVVLAERFGSSPALVSRCILWTTLASFLVLPILISIVGSV 309 A N+ ++A +F + P LVS +T+ S + LPI++ + V Sbjct: 260 AANTTLMAVQFDTKPDLVSSTTFISTVLSIITLPIVLYFLHPV 302 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 310,377,139 Number of extensions: 9495434 Number of successful extensions: 39283 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 39336 Number of HSP's successfully gapped: 25 Length of query: 309 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 184 Effective length of database: 417,850,203 Effective search space: 76884437352 Effective search space used: 76884437352 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)