BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0015.p
         (54 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00184312.1| hypothetical protein Exigu029001 [Exiguobacte...    59   3e-08
ref|NP_780955.1| hypothetical membrane associated protein [Clost...    57   1e-07
ref|NP_621812.1| conserved hypothetical protein [Thermoanaerobac...    55   5e-07
ref|NP_389802.1| similar to cell wall-binding protein [Bacillus ...    52   4e-06
ref|NP_563435.1| conserved hypothetical protein [Clostridium per...    51   7e-06

>ref|ZP_00184312.1| hypothetical protein Exigu029001 [Exiguobacterium sp. 255-15]
          Length = 110

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           VY+EG+G   A DTGGAIKGNK+DV  E  S A+ FGRK+  I+VI
Sbjct: 56  VYVEGVGLAIALDTGGAIKGNKIDVLVEGESTAKTFGRKTIQIWVI 101


>ref|NP_780955.1| hypothetical membrane associated protein [Clostridium tetani E88]
 gb|AAO34892.1| hypothetical membrane associated protein [Clostridium tetani E88]
          Length = 368

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           VY+EG G+  AEDTGGAIKGN++DVY  S S A N+G K   +Y++
Sbjct: 322 VYVEGYGYAIAEDTGGAIKGNRIDVYLSSNSEANNWGVKWVNVYIL 367


>ref|NP_621812.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis]
 gb|AAM23416.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis]
          Length = 338

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           +Y+EG GF  A DTGGAIKGN++DVY+ +    RN+GR+   +Y++
Sbjct: 292 LYVEGYGFCIAADTGGAIKGNRIDVYFPTREEVRNWGRRYVKVYIL 337


>ref|NP_389802.1| similar to cell wall-binding protein [Bacillus subtilis]
 pir||E69901 cell wall-binding protein homolog yocH - Bacillus subtilis
 gb|AAB84474.1| YocH [Bacillus subtilis]
 emb|CAB13813.1| yocH [Bacillus subtilis subsp. subtilis str. 168]
          Length = 287

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           VY+EG G   A DTGGAIKGNK+DV+  S S A N+G K+ ++ V+
Sbjct: 241 VYVEGYGEATAADTGGAIKGNKIDVFVPSKSDASNWGVKTVSVKVL 286


>ref|NP_563435.1| conserved hypothetical protein [Clostridium perfringens]
 dbj|BAB82225.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 340

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVIG 47
           VY+EG G+  AEDTGGAIK N +D++  S    + +GR++  +Y+I 
Sbjct: 289 VYVEGYGYAVAEDTGGAIKNNIIDLFLNSAPECKQWGRRNVNLYIIA 335


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 86,200,361
Number of extensions: 2595182
Number of successful extensions: 4431
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4433
Number of HSP's successfully gapped: 8
Length of query: 54
Length of database: 757,237,578
Length adjustment: 26
Effective length of query: 28
Effective length of database: 686,645,004
Effective search space: 19226060112
Effective search space used: 19226060112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)