BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0013.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240922.1| BH0056~unknown conserved protein [Bacillus halo... 222 3e-57 ref|NP_653988.1| Toprim, The Topoisomerase- primase domain- a nu... 202 2e-51 ref|NP_829942.1| Ribonuclease M5 [Bacillus cereus ATCC 14579] >g... 201 5e-51 ref|NP_387922.1| similar to hypothetical proteins [Bacillus subt... 188 4e-47 ref|NP_690970.1| hypothetical protein OB0049 [Oceanobacillus ihe... 172 3e-42 >ref|NP_240922.1| BH0056~unknown conserved protein [Bacillus halodurans] pir||H83656 hypothetical protein BH0056 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03775.1| BH0056 [Bacillus halodurans] Length = 185 Score = 222 bits (566), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/181 (62%), Positives = 138/181 (76%), Gaps = 2/181 (1%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEG+ DT+AI+RAV ADTIET GSAV+ + + +IALA +RRGVIILTDPD+ GE Sbjct: 3 IKEMIVVEGRDDTIAIQRAVNADTIETNGSAVNEETLKRIALAQQRRGVIILTDPDYPGE 62 Query: 62 RIRKIVSSKVPGCKHAFIPEKDATRKG--DIGVENASPEAIRHALEHVHTSFEGAPALIG 119 RIR+IVS +VPGCKHAF+P+K A K D+GVENA+PEAIRHALE VH + E +I Sbjct: 63 RIRRIVSERVPGCKHAFLPKKAALSKNGDDLGVENAAPEAIRHALEKVHEAMEDPLEVIS 122 Query: 120 MEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQG 179 +DL AG+M A +RR LG LLGIGY NGK LYKRL F IT+ EF+ A+AQI + Sbjct: 123 RQDLFDAGLMAGADAKKRREQLGILLGIGYANGKTLYKRLKAFQITKREFAEAIAQIVEE 182 Query: 180 G 180 G Sbjct: 183 G 183 >ref|NP_653988.1| Toprim, The Topoisomerase- primase domain- a nucleotidyl transferase/hydrolase domain [Bacillus anthracis A2012] ref|NP_842607.1| primase-related protein [Bacillus anthracis str. Ames] ref|NP_976366.1| primase-related protein [Bacillus cereus ATCC 10987] gb|AAP24093.1| primase-related protein [Bacillus anthracis str. Ames] gb|AAS38974.1| primase-related protein [Bacillus cereus ATCC 10987] Length = 185 Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/179 (56%), Positives = 132/179 (73%), Gaps = 2/179 (1%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEGK DTVAIKRAV+ADTIET GSA+ VI ++ LA+++RGVII TDPD+ GE Sbjct: 3 IKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYPGE 62 Query: 62 RIRKIVSSKVPGCKHAFIPEKD--ATRKGDIGVENASPEAIRHALEHVHTSFEGAPALIG 119 RIRKI+S KVPGCKHAF+P+++ A RK +G+E+AS E+IR ALE++H E + I Sbjct: 63 RIRKIISDKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSEIS 122 Query: 120 MEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQ 178 DL+ AG++ A RR +G LL IGY N KQL+KRL MF +++E F+ A Q+ Q Sbjct: 123 WSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHKRLQMFQVSKESFAEAYKQVIQ 181 >ref|NP_829942.1| Ribonuclease M5 [Bacillus cereus ATCC 14579] gb|AAP07143.1| Ribonuclease M5 [Bacillus cereus ATCC 14579] Length = 189 Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 101/179 (56%), Positives = 130/179 (72%), Gaps = 2/179 (1%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEGK DTVAIKRAV+ADTIET GSA+ VI ++ LA ++RGVII TDPD+ GE Sbjct: 7 IKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLAQQKRGVIIFTDPDYPGE 66 Query: 62 RIRKIVSSKVPGCKHAFIPEKD--ATRKGDIGVENASPEAIRHALEHVHTSFEGAPALIG 119 RIRKI+S KVPGCKHAF+P+++ A RK +G+E+AS E+IR ALE++H E I Sbjct: 67 RIRKIISDKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTGEIS 126 Query: 120 MEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQIDQ 178 DL+ AG++ A RR +G LL IGY N KQL+KRL MF +++E F+ A Q+ Q Sbjct: 127 WSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHKRLQMFQVSKESFAEAYKQVIQ 185 >ref|NP_387922.1| similar to hypothetical proteins [Bacillus subtilis] sp|P37547|YABF_BACSU Hypothetical protein yabF pir||S66070 conserved hypothetical protein yabF - Bacillus subtilis dbj|BAA05276.1| unknown [Bacillus subtilis] emb|CAB11817.1| ribonuclease M5 [Bacillus subtilis subsp. subtilis str. 168] Length = 186 Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 102/178 (57%), Positives = 125/178 (70%), Gaps = 4/178 (2%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEG+ DT IK AV+ADTIET GSA+D VI +I LA + RGVIILTDPD GE Sbjct: 3 IKEIIVVEGRDDTARIKLAVDADTIETNGSAIDDHVIDQIRLAQKTRGVIILTDPDFPGE 62 Query: 62 RIRKIVSSKVPGCKHAFIPE---KDATRKGDIGVENASPEAIRHALEHVHTSFEGAPALI 118 +IRK +S VPGCKHAF+P+ K ++G IGVE+AS E+IR LE+VH E P+ I Sbjct: 63 KIRKTISEAVPGCKHAFLPKHLAKPKNKRG-IGVEHASVESIRACLENVHEEMEAQPSDI 121 Query: 119 GMEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQI 176 EDL+ AG++ P A RR LG+LL IGY NGKQL KRL MF I + +F AL + Sbjct: 122 SAEDLIHAGLIGGPAAKCRRERLGDLLKIGYTNGKQLQKRLQMFQIKKSDFMSALDTV 179 >ref|NP_690970.1| hypothetical protein OB0049 [Oceanobacillus iheyensis HTE831] dbj|BAC12005.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 197 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 88/181 (48%), Positives = 126/181 (69%), Gaps = 4/181 (2%) Query: 2 IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61 IKE+IVVEG+ DT I+ AV+ADTIET GSA++++ + KI A E+RGVII TDPD+ GE Sbjct: 3 IKEMIVVEGRDDTARIQLAVDADTIETNGSAINKQTLEKIRHAKEKRGVIIFTDPDYPGE 62 Query: 62 RIRKIVSSKVPGCKHAFIPEKDA----TRKGDIGVENASPEAIRHALEHVHTSFEGAPAL 117 RIR I++ +PGCKHAF+P+++A + + +G+E+AS AI+ ALEHV+ E + Sbjct: 63 RIRNIINEHIPGCKHAFLPKEEAKNNKSDRASLGIEHASVAAIQKALEHVYELAEMKTSD 122 Query: 118 IGMEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQID 177 I DL+ G++ +A+ERR LG L IG+ NGKQL KRL F I++++ A+ +D Sbjct: 123 ILKADLIEYGLIGGKKASERREWLGKRLKIGHTNGKQLLKRLTQFQISKKQLDEAMELMD 182 Query: 178 Q 178 Q Sbjct: 183 Q 183 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 248,788,323 Number of extensions: 9386488 Number of successful extensions: 23740 Number of sequences better than 1.0e-05: 42 Number of HSP's gapped: 23686 Number of HSP's successfully gapped: 42 Length of query: 183 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 65 Effective length of database: 436,855,896 Effective search space: 28395633240 Effective search space used: 28395633240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)