BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0009.p
         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_240926.1| small acid-soluble spore protein (minor alpha/b...    85   6e-16
ref|NP_653992.1| SASP, Small, acid-soluble spore proteins, alpha...    84   1e-15
ref|NP_829946.1| SspF protein [Bacillus cereus ATCC 14579] >gi|1...    84   1e-15
sp|P52971|SSPF_BACME SSPF PROTEIN >gi|2126814|pir||I40011 sspF p...    82   3e-15
ref|NP_690975.1| small acid-soluble spore protein [Oceanobacillu...    79   4e-14

>ref|NP_240926.1| small acid-soluble spore protein (minor alpha/beta-type SASP)
          [Bacillus halodurans]
 pir||D83657 small acid-soluble spore protein (minor alpha/beta-type SASP)
          sspF [imported] - Bacillus halodurans (strain C-125)
 dbj|BAB03779.1| small acid-soluble spore protein (minor alpha/beta-type SASP)
          [Bacillus halodurans]
          Length = 61

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 50/53 (94%), Gaps = 1/53 (1%)

Query: 1  MSRRKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEE 53
          MSRR RG+MS+ LK E+AKELGFY+TV++EGWGGIRA+DAGNMVKRAI+LAE+
Sbjct: 1  MSRR-RGIMSDRLKEEIAKELGFYDTVQQEGWGGIRARDAGNMVKRAIELAEQ 52


>ref|NP_653992.1| SASP, Small, acid-soluble spore proteins, alpha/beta type
          [Bacillus anthracis A2012]
 ref|NP_842611.1| small, acid-soluble spore protein [Bacillus anthracis str. Ames]
 ref|NP_976370.1| small, acid-soluble spore protein [Bacillus cereus ATCC 10987]
 gb|AAP24097.1| small, acid-soluble spore protein [Bacillus anthracis str. Ames]
 gb|AAS38978.1| small, acid-soluble spore protein [Bacillus cereus ATCC 10987]
          Length = 59

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 48/53 (90%), Gaps = 1/53 (1%)

Query: 1  MSRRKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEE 53
          MSRR RG+MS + K ELAKELGFY+ V++EGWGGIRAKDAGNMVKRAI++AE+
Sbjct: 1  MSRR-RGVMSNQFKEELAKELGFYDVVQKEGWGGIRAKDAGNMVKRAIEIAEQ 52


>ref|NP_829946.1| SspF protein [Bacillus cereus ATCC 14579]
 sp|P52970|SSPF_BACCR SspF protein
 pir||I40012 sspF protein - Bacillus cereus
 gb|AAA65543.1| sspF
 gb|AAP07147.1| SspF protein [Bacillus cereus ATCC 14579]
          Length = 59

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 48/53 (90%), Gaps = 1/53 (1%)

Query: 1  MSRRKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEE 53
          MSRR RG+MS + K ELAKELGFY+ V++EGWGGIRAKDAGNMVKRAI++AE+
Sbjct: 1  MSRR-RGVMSNQFKEELAKELGFYDVVQKEGWGGIRAKDAGNMVKRAIEIAEQ 52


>sp|P52971|SSPF_BACME SSPF PROTEIN
 pir||I40011 sspF protein - Bacillus megaterium
 gb|AAA65542.1| sspF
          Length = 56

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 48/53 (90%), Gaps = 1/53 (1%)

Query: 1  MSRRKRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEE 53
          MSRR RG+MS +LK ELAKELGFY+TV+ EGWG IRAKDAGNMVKRA++LA++
Sbjct: 1  MSRR-RGIMSSKLKEELAKELGFYDTVQAEGWGAIRAKDAGNMVKRAVELAQQ 52


>ref|NP_690975.1| small acid-soluble spore protein [Oceanobacillus iheyensis
          HTE831]
 dbj|BAC12010.1| small acid-soluble spore protein (minor alpha:beta-type SASP)
          [Oceanobacillus iheyensis HTE831]
          Length = 57

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 48/52 (92%)

Query: 5  KRGMMSEELKTELAKELGFYETVEREGWGGIRAKDAGNMVKRAIQLAEEAAR 56
          +RG+MS ++K E+AKELGFY+TV++EGWGGI+++DAGNMVKRAI++AE+  R
Sbjct: 3  RRGIMSTQMKEEIAKELGFYDTVKQEGWGGIKSRDAGNMVKRAIEIAEQQMR 54


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 68,096,056
Number of extensions: 1764862
Number of successful extensions: 4567
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4568
Number of HSP's successfully gapped: 9
Length of query: 59
Length of database: 757,237,578
Length adjustment: 31
Effective length of query: 28
Effective length of database: 673,069,509
Effective search space: 18845946252
Effective search space used: 18845946252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)