BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0023.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_472118.1| lin2789 [Listeria innocua] >gi|16804678|ref|NP_... 75 7e-13 ref|NP_816856.1| conserved domain protein [Enterococcus faecalis... 69 4e-11 ref|NP_563020.1| hypothetical protein [Clostridium perfringens] ... 64 2e-09 ref|NP_784754.1| integral membrane protein [Lactobacillus planta... 63 3e-09 ref|NP_624010.1| conserved hypothetical protein [Thermoanaerobac... 63 3e-09 >ref|NP_472118.1| lin2789 [Listeria innocua] ref|NP_466163.1| lmo2640 [Listeria monocytogenes EGD-e] pir||AG1780 hypothetical protein lin2789 [imported] - Listeria innocua (strain Clip11262) pir||AH1404 hypothetical protein lmo2640 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00718.1| lmo2640 [Listeria monocytogenes] emb|CAC98015.1| lin2789 [Listeria innocua] Length = 180 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 66/137 (48%) Query: 42 PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101 PGAKLG ANI+ ++ L +D F+ Sbjct: 35 PGAKLGLANIITCISLYTLSAKDTFMIICIRLVLSTLLGGTISTFMYSAAGAILSFLGMW 94 Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161 + G K+ S+IG+S+ GG+ HN GQL A+ + + S+ YLPVL GI++GIAVG Sbjct: 95 LVQQLGPKRVSIIGVSVTGGILHNVGQLVIASWIAGTWSVMLYLPVLSFIGILSGIAVGI 154 Query: 162 AVRYLVASLSKISLFEE 178 A YL+ ++ + +F + Sbjct: 155 AANYLLKNVQTLRMFAD 171 >ref|NP_816856.1| conserved domain protein [Enterococcus faecalis V583] gb|AAO82926.1| conserved domain protein [Enterococcus faecalis V583] Length = 185 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 61/136 (44%) Query: 42 PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101 PGAKLG AN++ + IF +R RD+F Sbjct: 35 PGAKLGLANLITIIAIFTMRKRDSFFLVCLRLILTTLLGGTLSTFFYSASGALLSYFGML 94 Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161 + G K+ S+IGIS GG HN GQL + S + YLP L + G+++GIA+G Sbjct: 95 LVKQLGPKRVSIIGISAVGGFLHNVGQLLTTSFFAHSWAPMLYLPFLSLFGLLSGIAIGI 154 Query: 162 AVRYLVASLSKISLFE 177 A YL+ + + F+ Sbjct: 155 AANYLLQHVQTLRKFQ 170 >ref|NP_563020.1| hypothetical protein [Clostridium perfringens] dbj|BAB81810.1| hypothetical protein [Clostridium perfringens str. 13] Length = 171 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 34 PLVGVGLMPGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXX 93 PLV + PG KLG ANI+ L ++ R+A Sbjct: 29 PLVPI---PGVKLGLANIITLIVLYLYGIREASTVLIIRILLGSMFSGQVVSLLYSLSGG 85 Query: 94 XXXXXXXXXXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGI 153 K GK+ + +S+ G +AHN GQ+ A I+F++TS+ YYLPVL+++G+ Sbjct: 86 LMCLLVMILLMKIVGKE-GIWFVSVGGAIAHNIGQIIIAMILFQTTSVLYYLPVLILSGV 144 Query: 154 VTGIAVGYAVRYLVAS 169 +TG+ G +Y++ + Sbjct: 145 ITGVFTGLLSKYMITN 160 >ref|NP_784754.1| integral membrane protein [Lactobacillus plantarum WCFS1] emb|CAD63601.1| integral membrane protein [Lactobacillus plantarum WCFS1] Length = 189 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 56/125 (44%) Query: 42 PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101 PGAKLG AN++ + I+ L D Sbjct: 42 PGAKLGLANLITIVAIYTLSLTDVITLTWLRLILTALLGGTLSTFLYSFGGAFLSLFAML 101 Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161 + G K+ S+IGIS GG+ HN GQL A+++ ++ ++ YLPVL I G+ G A+G Sbjct: 102 LVKQLGPKRVSIIGISATGGVMHNVGQLLVASLIAQTWTVMLYLPVLSIIGLAAGSALGI 161 Query: 162 AVRYL 166 A YL Sbjct: 162 AANYL 166 >ref|NP_624010.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] gb|AAM25614.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis] Length = 183 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%) Query: 42 PGAKLGFANIMILTCIFFLRGRDAFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 101 PGAKLG ANI+ +T ++ D + Sbjct: 47 PGAKLGLANIITVTSLYLFGFIDTLIVLIVRILLATFFASSPSTFFYSLGGGLLSLIVMY 106 Query: 102 XXXKWGGKKFSVIGISIAGGLAHNTGQLFAAAIVFKSTSIFYYLPVLLITGIVTGIAVGY 161 G S +G+S++GG+ HN GQ+ A+ + ++ I YLPVL+I GI TGI VG Sbjct: 107 LVKNIGKNHVSEVGVSVSGGVFHNIGQMLVASAIVQNIKIMIYLPVLMIAGIGTGIFVGL 166 Query: 162 AVRYLVASLSKISLFE 177 + ++L+ +K+ + + Sbjct: 167 SSKFLLKHWNKLKILK 182 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.143 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 159,332,450 Number of extensions: 4373150 Number of successful extensions: 17378 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 17374 Number of HSP's successfully gapped: 11 Length of query: 181 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 63 Effective length of database: 436,855,896 Effective search space: 27521921448 Effective search space used: 27521921448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 122 (51.6 bits)