BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0021.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_976468.1| ABC transporter, ATP-binding protein [Bacillus ... 280 2e-74 ref|NP_830040.1| Cobalt transport ATP-binding protein cbiO [Baci... 278 8e-74 ref|NP_654083.1| ABC_tran, ABC transporter [Bacillus anthracis A... 278 2e-73 ref|NP_472078.1| similar to ABC transporter (ATP-binding protein... 263 3e-69 ref|NP_466123.1| similar to ABC transporter (ATP-binding protein... 260 2e-68 >ref|NP_976468.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39076.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 293 Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 134/282 (47%), Positives = 195/282 (69%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQHKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S EE Sbjct: 61 NGTVQIGEHFISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSVEE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK++AR+A+ +GL+ LL R+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 AKQKAREAIELVGLEPELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ +L E+G T+I+VTH M++ YA++ +++ G + QGS E+ D L Sbjct: 181 QNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFSHADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQV 282 >ref|NP_830040.1| Cobalt transport ATP-binding protein cbiO [Bacillus cereus ATCC 14579] gb|AAP07241.1| Cobalt transport ATP-binding protein cbiO [Bacillus cereus ATCC 14579] Length = 293 Score = 278 bits (712), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 133/282 (47%), Positives = 196/282 (69%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S +E Sbjct: 61 NGTVQIGEHLISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSVDE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 A+++AR+A+ +GL+ LLTR+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 ARQKARKAIELVGLEPELLTRSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ +L E+G T+I+VTH M++ YA++ +++ G + QGS E+ D L Sbjct: 181 QNELMEMFYKLHKEKGLTVILVTHNMEDAAQYAEQIVVMHKGTVFLQGSAEEVFSHADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQV 282 >ref|NP_654083.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_842708.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP24194.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 293 Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 133/282 (47%), Positives = 194/282 (68%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I Q+V + Y + +++ AL+++ + P G I G TGSGKST++Q NG+L+PT Sbjct: 1 MEITFQKVEHRYQYKTPFERRALYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTVQ+ + I AG+K KL PLR++VG+VFQFPE Q+FE+TVEKD+CFGP NFG+S E Sbjct: 61 NGTVQIGEHFISAGKKEKKLKPLRKKVGVVFQFPEHQLFEETVEKDICFGPTNFGVSEEA 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK++AR+A+ +GL+ LL R+PF LSGGQMR+ AIA VLAM+PE++VLDEPTA LDP Sbjct: 121 AKQKAREAIELVGLEPELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + EL+ +L E+G T+I+VTH M++ YA++ +++ G + QGS E+ D L Sbjct: 181 QNELMEMFYKLHKEKGLTVILVTHNMEDAAKYAEQIVVMHKGTVFLQGSAEEVFSHADEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 + G+ +P SL+Y R I ++FG++ K L+ E L + + Sbjct: 241 EKIGVDLPMSLKYKRAIEEKFGISIPKATLSLEDLTHEVVQV 282 >ref|NP_472078.1| similar to ABC transporter (ATP-binding protein) [Listeria innocua] pir||AG1775 ABC transporter (ATP-binding protein) homolog lin2749 [imported] - Listeria innocua (strain Clip11262) emb|CAC97975.1| lin2749 [Listeria innocua] Length = 288 Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 136/282 (48%), Positives = 189/282 (67%), Gaps = 3/282 (1%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I+L+Q+ Y Y +NS +++ AL ++ + GS + I G TGSGKSTLLQ N +L PT Sbjct: 1 MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 +G + V D I AG K KL LR++VG+VFQFPE Q+FE+TVEKD+CFGP+NFG+S E+ Sbjct: 61 EGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEED 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK RA++ + E+GL +L+R+PF LSGGQMR+ AIA VLAMDPE++VLDEPTA LDP Sbjct: 121 AKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 R E++ L E+G T ++VTH M++ YA++ +L+K G + GS E+ +PD L Sbjct: 181 REEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLKIGSPREIFAKPDEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 GL VP +R+ +F + K LT +AEL A + Sbjct: 241 VDLGLSVPDVVRFQGLFERKFNVKLTKTCLT---IAELTAEM 279 >ref|NP_466123.1| similar to ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AH1399 ABC transporter (ATP-binding protein) homolog lmo2600 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00678.1| lmo2600 [Listeria monocytogenes] Length = 288 Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 133/280 (47%), Positives = 187/280 (66%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I+L+Q+ Y Y +NS +++ AL ++ + GS + I G TGSGKSTLLQ N +L PT Sbjct: 1 MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 +G + V D I AG K KL LR++VG+VFQFPE Q+FE+TVEKD+CFGP+NFG+S E+ Sbjct: 61 EGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEED 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK RA++ + E+GL +L+R+PF LSGGQMR+ AIA VLAMDPE++VLDEPTA LDP Sbjct: 121 AKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 R E++ L E+G T ++VTH M++ YA++ +L+K G + G+ E+ +PD L Sbjct: 181 REEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIA 280 GL VP +R+ +F + K LT + L +A Sbjct: 241 VDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTTEMA 280 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 409,793,352 Number of extensions: 16918104 Number of successful extensions: 113713 Number of sequences better than 1.0e-05: 19519 Number of HSP's gapped: 93329 Number of HSP's successfully gapped: 20920 Length of query: 299 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 174 Effective length of database: 417,850,203 Effective search space: 72705935322 Effective search space used: 72705935322 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)