BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0011.p
         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAG71915.1| unknown [environmental sequence]                        76   2e-13
ref|ZP_00146798.1| hypothetical protein Psyc037601 [Psychrobacte...    75   3e-13
ref|NP_869695.1| conserved hypothetical protein [Pirellula sp. 1...    74   7e-13
gb|EAH19813.1| unknown [environmental sequence]                        74   8e-13
ref|NP_458538.1| conserved hypothetical protein [Salmonella ente...    74   1e-12

>gb|EAG71915.1| unknown [environmental sequence]
          Length = 69

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 50/63 (79%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ + + G W Q KG+ K+QWG+LTDDD+ VI+G++D+L+GK+QERYG+ KD AE E  +
Sbjct: 1  MNKDEVGGNWKQFKGKVKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYAKDQAEKEVDS 60

Query: 61 WEQ 63
          WE+
Sbjct: 61 WEK 63


>ref|ZP_00146798.1| hypothetical protein Psyc037601 [Psychrobacter sp. 273-4]
          Length = 67

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ + +KG+W Q+KG  K++W  LTDDDL  ++G +DKL+GK+QERYGH+KDDAE E   
Sbjct: 1  MNEHTLKGEWNQIKGSVKQKWADLTDDDLLHVEGSRDKLVGKVQERYGHSKDDAEREVDA 60

Query: 61 W 61
          W
Sbjct: 61 W 61


>ref|NP_869695.1| conserved hypothetical protein [Pirellula sp. 1]
 emb|CAD77073.1| conserved hypothetical protein [Pirellula sp.]
          Length = 68

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 52/65 (80%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ + I+GKW QLKG+A++QWG LTDDDLD +DG++++L+G +QERYG  KD+AE + + 
Sbjct: 2  MNWDRIEGKWKQLKGQAQQQWGDLTDDDLDRVDGKREELVGVVQERYGLAKDEAEKQVQQ 61

Query: 61 WEQSI 65
          +E S 
Sbjct: 62 FESSC 66


>gb|EAH19813.1| unknown [environmental sequence]
          Length = 67

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 51/66 (77%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ + I+GKW Q KG+ K++WGQLTDDDL VI G++D+L GK+QERYG+TK+  E E + 
Sbjct: 1  MNWDQIEGKWDQAKGKIKEKWGQLTDDDLTVIRGKRDQLAGKIQERYGYTKERTEDELKA 60

Query: 61 WEQSIR 66
          WE+  R
Sbjct: 61 WERDTR 66


>ref|NP_458538.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi]
 ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]
 ref|NP_807750.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi Ty2]
 pir||AG1015 conserved hypothetical protein STY4436 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gb|AAL23064.1| putative cytoplasmic protein [Salmonella typhimurium LT2]
 emb|CAD09224.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi]
 gb|AAO71610.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi Ty2]
          Length = 70

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 48/62 (77%)

Query: 1  MDSNVIKGKWMQLKGEAKKQWGQLTDDDLDVIDGEKDKLIGKLQERYGHTKDDAEAEYRN 60
          M+ +   G W Q KG+ K+QWG+LTDDD+ VI+G++D+L+GK+QERYG+ KD AE E  +
Sbjct: 2  MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVD 61

Query: 61 WE 62
          WE
Sbjct: 62 WE 63


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.311    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 112,769,027
Number of extensions: 3943038
Number of successful extensions: 10004
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 9977
Number of HSP's successfully gapped: 37
Length of query: 67
Length of database: 757,237,578
Length adjustment: 38
Effective length of query: 29
Effective length of database: 654,063,816
Effective search space: 18967850664
Effective search space used: 18967850664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)