BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0007.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_978418.1| conserved hypothetical protein [Bacillus cereus... 192 6e-48 ref|NP_831790.1| Oxidoreductase [Bacillus cereus ATCC 14579] >gi... 191 9e-48 ref|NP_655896.1| Semialdhyde_dh, Semialdehyde dehydrogenase, NAD... 190 2e-47 ref|NP_712824.1| HIV-1 Tat interactive protein-like protein [Lep... 167 1e-40 gb|AAS69945.1| conserved hypothetical protein [Leptospira interr... 167 1e-40 >ref|NP_978418.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41026.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 219 Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 101/216 (46%), Positives = 139/216 (64%), Gaps = 2/216 (0%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A+VLGA+GLVG +T LL ++ + V + VR PM+ +H L+Q +D+ L EYKE Sbjct: 4 RTALVLGASGLVGQEITRLLLESDYYDSVTIFVREPMQWQHEKLQQKQVDYLALEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VF CLGTTIKKA ++ F++VD EY L AA LA+ GV+ FL VSSMGAN +S Sbjct: 64 FA-VDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPKSF 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FYS+ KG++E L + G+H+FRPSLL+G+R+E R GER+A + + + F G Sbjct: 123 FFYSQVKGRMEEELQKLVIGGIHIFRPSLLVGNRQEFRFGERMAEKLSRMIPFIFKGAFK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVI 217 KY+ + A VA+ M AL + G+HIY + I I Sbjct: 183 KYKPISAKDVAKGMYITALREESGIHIYNSNEITTI 218 >ref|NP_831790.1| Oxidoreductase [Bacillus cereus ATCC 14579] gb|AAP08991.1| Oxidoreductase [Bacillus cereus ATCC 14579] Length = 219 Score = 191 bits (485), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 99/216 (45%), Positives = 138/216 (63%), Gaps = 2/216 (0%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A++LGA+GLVG +T L ++ + V + VR PM+L+H L+Q +D+ L EYKE Sbjct: 4 RTALILGASGLVGQEITRLLFESDYYDSVTIFVREPMQLQHEKLQQKQVDFSVLEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VF CLGTTIKKA ++ F++VD EY L AA LA+ GV+ FL VSSMGAN +S Sbjct: 64 FA-VDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPKSF 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FYS+ KGK+E L + G+H+FRPSLL+G+R+E R GE++A + + + F G Sbjct: 123 FFYSQVKGKMEEELQKLVIGGIHIFRPSLLVGNRQEFRFGEQMAEKLSRIIPFIFKGAFK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVI 217 KY+ + A VA+ M AL + G+H Y + I I Sbjct: 183 KYKPISAKDVAKGMYITALREESGIHTYNSNEITTI 218 >ref|NP_655896.1| Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain [Bacillus anthracis A2012] ref|NP_844439.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP25925.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 219 Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/216 (46%), Positives = 139/216 (64%), Gaps = 2/216 (0%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERLAEYKEQ 61 R A+VLGA+GLVG +T LL ++ + V + VR P++ +H L+Q +D+ L EYKE Sbjct: 4 RTALVLGASGLVGQEITRLLLESDYYDSVTIFVREPIQWQHEKLQQKQVDYLALEEYKEF 63 Query: 62 FAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVRSR 121 FA VF CLGTTIKKA ++ F++VD EY L AA LA+ GV+ FL VSSMGAN +S Sbjct: 64 FA-VDDVFSCLGTTIKKAKTKANFKKVDYEYTLRAACLAEKQGVQNFLVVSSMGANPKSF 122 Query: 122 AFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGKAA 181 FYS+ KG++E L + G+H+FRPSLL+G+R+E R GER+A + + + F G Sbjct: 123 FFYSQVKGRMEEELQKLVIGGIHIFRPSLLVGNRQEFRFGERMAEKLSRMIPFIFKGAFK 182 Query: 182 KYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVI 217 KY+ + A VA+ M AL + G+HIY + I I Sbjct: 183 KYKPISAKDVAKGMYITALREESGIHIYNSNEITTI 218 >ref|NP_712824.1| HIV-1 Tat interactive protein-like protein [Leptospira interrogans serovar lai str. 56601] gb|AAN49842.1| HIV-1 Tat interactive protein-like protein [Leptospira interrogans serovar lai str. 56601] Length = 278 Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 136/220 (61%), Gaps = 8/220 (3%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERL--AEYK 59 +IA+V GATGL+G L E+L + + V LVRRP + G+++++ D+E L A Sbjct: 60 KIALVAGATGLIGKCLLEELSQSSYYQKVYALVRRPGNI--TGIEEIVSDYESLVAASLP 117 Query: 60 EQFAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVR 119 ++ + VFCCLGTTI KAGSQE F +VD EY L A K G + FL VS++GA+ + Sbjct: 118 KEI---TDVFCCLGTTISKAGSQENFRKVDHEYVLKLAKFTKEKGTRSFLVVSALGADPK 174 Query: 120 SRAFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGK 179 S FY+R KG++E L IGF L +FRPSLL G+REE RPGE V +V K ++ + G Sbjct: 175 SFVFYNRVKGEMEKDLEKIGFSFLGIFRPSLLEGEREEVRPGEVVGHLVAKIVNPFLWGG 234 Query: 180 AAKYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVIGK 219 KYR++ VA+AM+ IA + G+ I ++ I G+ Sbjct: 235 IRKYRSIHGRTVAKAMIQIAEKEPKGIRILESDRIADFGQ 274 >gb|AAS69945.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 222 Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 136/220 (61%), Gaps = 8/220 (3%) Query: 3 RIAVVLGATGLVGSALTEDLLNGEWAE-VRVLVRRPMKLRHPGLKQVIIDWERL--AEYK 59 +IA+V GATGL+G L E+L + + V LVRRP + G+++++ D+E L A Sbjct: 4 KIALVAGATGLIGKCLLEELSQSSYYQKVYALVRRPGNI--TGIEEIVSDYESLVAASLP 61 Query: 60 EQFAGASAVFCCLGTTIKKAGSQEKFERVDLEYPLAAAALAKTCGVKQFLAVSSMGANVR 119 ++ + VFCCLGTTI KAGSQE F +VD EY L A K G + FL VS++GA+ + Sbjct: 62 KEI---TDVFCCLGTTISKAGSQENFRKVDHEYVLKLAKFTKEKGARSFLVVSALGADPK 118 Query: 120 SRAFYSRTKGKLENGLGAIGFQGLHLFRPSLLLGDREESRPGERVAAIVMKALDFAMVGK 179 S FY+R KG++E L IGF L +FRPSLL G+REE RPGE V +V K ++ + G Sbjct: 119 SFVFYNRVKGEMEKDLEKIGFSFLGIFRPSLLEGEREEVRPGEVVGHLVAKIVNPFLWGG 178 Query: 180 AAKYRAVPAAKVARAMMNIALADTGGVHIYTNEVIHVIGK 219 KYR++ VA+AM+ IA + G+ I ++ I G+ Sbjct: 179 IRKYRSIHGRTVAKAMIQIAEKEPKGIRILESDRIADFGQ 218 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 290,947,099 Number of extensions: 10604572 Number of successful extensions: 25000 Number of sequences better than 1.0e-05: 237 Number of HSP's gapped: 24863 Number of HSP's successfully gapped: 237 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)