BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0006.p (134 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_561928.1| probable translation initiation inhibitor [Clos... 167 6e-41 ref|ZP_00097037.1| COG0251: Putative translation initiation inhi... 163 1e-39 emb|CAE56534.1| Hypothetical protein CBG24261 [Caenorhabditis br... 162 3e-39 ref|NP_126926.1| translation initiation inhibitor, putative. [Py... 158 3e-38 ref|ZP_00098435.1| COG0251: Putative translation initiation inhi... 157 5e-38 >ref|NP_561928.1| probable translation initiation inhibitor [Clostridium perfringens] dbj|BAB80718.1| probable translation initiation inhibitor [Clostridium perfringens str. 13] Length = 126 Score = 167 bits (424), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 79/126 (62%), Positives = 99/126 (78%) Query: 9 MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKA 68 M+K+ + T KAPGAIGPYSQ + G++VYTSGQ+ LNPETG +A + EQ QSL NVKA Sbjct: 1 MAKEIIKTNKAPGAIGPYSQGIKIGDFVYTSGQIPLNPETGVMAGSIEEQTAQSLENVKA 60 Query: 69 ILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIE 128 ILE AG S++ V+KTTV+L DMNDF +NEVY+++FTE PARSAVEVA+LPKD +EIE Sbjct: 61 ILEAAGTSMDKVIKTTVFLSDMNDFVRMNEVYATYFTENQPARSAVEVAKLPKDAKIEIE 120 Query: 129 AVARKK 134 +A K Sbjct: 121 VIATLK 126 >ref|ZP_00097037.1| COG0251: Putative translation initiation inhibitor, yjgF family [Desulfitobacterium hafniense] Length = 125 Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/123 (62%), Positives = 95/123 (77%) Query: 9 MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKA 68 MS K + TEKAPGAIGPYSQ + AGN ++TSGQL LNP TG L + +QSL NVK Sbjct: 1 MSLKVLNTEKAPGAIGPYSQGIQAGNLIFTSGQLPLNPTTGELTSDIRSATKQSLENVKN 60 Query: 69 ILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIE 128 ILE AG+S++ +VKT ++LKDMNDFA +NEVY S+F PARSAV+VARLPKD ++EIE Sbjct: 61 ILESAGSSMDKIVKTLIFLKDMNDFAEMNEVYGSYFPTNPPARSAVQVARLPKDAIIEIE 120 Query: 129 AVA 131 A+A Sbjct: 121 AIA 123 >emb|CAE56534.1| Hypothetical protein CBG24261 [Caenorhabditis briggsae] Length = 172 Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 77/125 (61%), Positives = 96/125 (76%) Query: 7 ENMSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNV 66 + ++++ ++T APGAIGPYSQAV AGN +Y SG LGL+P+TG L EG+VEQ QSL N+ Sbjct: 38 QKVTRQIISTANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGIVEQTHQSLKNI 97 Query: 67 KAILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVE 126 +L+ AGA HVVKTTV L+D+ DFA VNEVY +F PYPAR+A +VA LPK GLVE Sbjct: 98 GEVLKAAGADYGHVVKTTVLLQDIKDFATVNEVYGQYFKAPYPARAAYQVAALPKGGLVE 157 Query: 127 IEAVA 131 IEAVA Sbjct: 158 IEAVA 162 >ref|NP_126926.1| translation initiation inhibitor, putative. [Pyrococcus abyssi] sp|Q9UZA3|YC51_PYRAB Hypothetical protein PYRAB12510 pir||G75032 probable translation initiation inhibitor PAB0825 - Pyrococcus abyssi (strain Orsay) emb|CAB50156.1| Translation initiation inhibitor [Pyrococcus abyssi] Length = 127 Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 75/126 (59%), Positives = 100/126 (79%), Gaps = 1/126 (0%) Query: 9 MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEG-VVEQARQSLSNVK 67 M+K+ + TEKAP IGPYSQA+ GN+++ +GQ+ ++PETG + +G + EQ ++ + N+K Sbjct: 1 MAKEVIFTEKAPKPIGPYSQAIKVGNFIFVAGQIPIDPETGEIVKGDIKEQTKRVIENIK 60 Query: 68 AILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEI 127 AILEEAGASL VVK TVYLKD+NDFA +NEVYS +F E PAR AVEV+RLPKD L+E+ Sbjct: 61 AILEEAGASLNDVVKVTVYLKDLNDFAKMNEVYSEYFGESKPARVAVEVSRLPKDVLIEM 120 Query: 128 EAVARK 133 EA+A K Sbjct: 121 EAIAYK 126 >ref|ZP_00098435.1| COG0251: Putative translation initiation inhibitor, yjgF family [Desulfitobacterium hafniense] Length = 126 Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 76/123 (61%), Positives = 92/123 (74%) Query: 9 MSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQARQSLSNVKA 68 MS + T+KAP AIGPYSQ + AGN V+TSGQL LNP TG L + + QSL NV+ Sbjct: 1 MSINVLHTDKAPAAIGPYSQGIKAGNLVFTSGQLPLNPVTGELETDIRKATHQSLENVRN 60 Query: 69 ILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTEPYPARSAVEVARLPKDGLVEIE 128 ILE AG SL VVK V+L+DMNDFAA+NE+Y +FFT PARSAV+VARLPKD ++EIE Sbjct: 61 ILESAGTSLAKVVKVVVFLRDMNDFAAMNEIYGTFFTTNPPARSAVQVARLPKDAIIEIE 120 Query: 129 AVA 131 A+A Sbjct: 121 AIA 123 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.309 0.126 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 180,371,161 Number of extensions: 6229243 Number of successful extensions: 17439 Number of sequences better than 1.0e-05: 649 Number of HSP's gapped: 17052 Number of HSP's successfully gapped: 654 Length of query: 134 Length of database: 757,237,578 Length adjustment: 96 Effective length of query: 38 Effective length of database: 496,588,074 Effective search space: 18870346812 Effective search space used: 18870346812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 120 (50.8 bits)