BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0002.p (975 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_615162.1| helicase (SNF2 family) [Methanosarcina acetivor... 599 e-169 ref|NP_925212.1| probable helicase [Gloeobacter violaceus] >gi|3... 596 e-169 ref|NP_336629.1| helicase, SNF2/RAD54 family [Mycobacterium tube... 592 e-167 ref|NP_855776.1| PROBABLE HELICASE HELZ [Mycobacterium bovis sub... 589 e-166 ref|NP_216617.1| helZ [Mycobacterium tuberculosis H37Rv] >gi|747... 588 e-166 >ref|NP_615162.1| helicase (SNF2 family) [Methanosarcina acetivorans str. C2A] gb|AAM03642.1| helicase (SNF2 family) [Methanosarcina acetivorans str. C2A] Length = 1078 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 334/754 (44%), Positives = 454/754 (60%), Gaps = 49/754 (6%) Query: 249 EEWRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRY--RNIQQQLLSALGRAAKLSP 306 E W + + ++S E+ +P W ++ KRY +NI+Q LLS+LG+AA +S Sbjct: 336 ELWYVRYMLQSYEDPSLLIPVKEAWKPKKGSPL---KRYDVKNIRQFLLSSLGQAAGISA 392 Query: 307 DIQRALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKMKMQ 366 I +L P P G L ++ Y FL ES L + G + +P W+R+G + +K Q Sbjct: 393 GIASSLEAPNPSGYSLDTKEAYRFLTESAADLSQAGFGLLLPGWWTRKGTK---THLKAQ 449 Query: 367 PPAGGIDGPAQAALGMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDP 426 G A L +++++SF E +LGD +T EL AL + P V+FRG+W+E++ Sbjct: 450 ANVKGKKLKAGYGLTLDKIVSFDWEIALGDRALTVRELQALAKLKAPLVKFRGQWVEVND 509 Query: 427 KEVRQVLRYMKRNESGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSG----LLASLMQG 482 E+R L + K+N GE S E ++L G G+ V G+ +G L+ L Sbjct: 510 AEIRAALEFWKKNPHGEASLREVLKLAV--GVSEKADGVDVEGLNAAGWIEELIRRLKDK 567 Query: 483 DMLRHLPVRAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCL-- 540 LP P GTLRPYQ RG+ WLA L G G CLADDMGLGKT+Q + + Sbjct: 568 TGFEELPA---PDGFSGTLRPYQFRGYSWLAFLRQWGIGACLADDMGLGKTIQTLALIQH 624 Query: 541 --------LDRALTAPPEEQRE------PVLILCPTSLLGNWQRELQRFAPSLXXXXXXX 586 ++ + EE+ E PVL++CPTS++ NW++E RF P L Sbjct: 625 DLEQVKGQVEEKVIENAEEKVEGLKAAKPVLLVCPTSVINNWKKEAARFTPELSVMVHHG 684 Query: 587 XXXXXXXXFAQLAASHEIVLTTYHLAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSV 646 F + A +H IV+++Y L RD + L GV W+ VVLDEAQ IKN TKQA++ Sbjct: 685 TSRKKEEEFKKEATNHSIVVSSYGLLQRDLKFLKGVSWAGVVLDEAQNIKNPETKQAKAA 744 Query: 647 MKLSAPHRIAMTGTPVENRLGELWSIFHFLNPGYLGTYHSFRQRYVSGEGGDR----LRE 702 L A +RIA+TGTPVEN +G+LWSI FLNPG+LG F++ + +R R Sbjct: 745 RALEADYRIALTGTPVENNVGDLWSIMEFLNPGFLGNQAGFKRNFFIPIQAERDQEAARR 804 Query: 703 LHRLVSPFLLRRLKSDPDISKDLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERS-G 761 L + PF+LRRLK+D I DLPEK+E+K YCTLT+ QA+LY V+ ++ + E G Sbjct: 805 LKEITGPFILRRLKTDTSIISDLPEKMEMKTYCTLTKEQASLYAAVLEDIEETMEEAEEG 864 Query: 762 MARRGLVLSSLTKLKQICDHPQLFRGDE----GRGQRSEASGKMEVMFEVLDSIAGLGES 817 + R+G++LS+LT+LKQ+C+HP F D GR SGK+ + E+LD I GE Sbjct: 865 IQRKGIILSALTRLKQVCNHPAQFLKDNSAVPGR------SGKLARLTEMLDVILENGEK 918 Query: 818 ALIFTQYVAMGELLVSRLARRYGKAPLFLHGGVPKRERDEMVHAFQEG-EGPAFFVLSLK 876 AL+FTQ+ MG++L L +G LFLHGGVP+++RD M+ FQEG E FVLSLK Sbjct: 919 ALVFTQFAEMGKMLKEHLQASFGCEVLFLHGGVPRKQRDRMLERFQEGKEYLPIFVLSLK 978 Query: 877 AGGVGLNLTRANHVLHYDRWWNPAVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDEL 936 AGG GLNLT ANHV H+DRWWNPAVENQATDRAFRIGQ KNV+VHK IC GTLEE+IDE+ Sbjct: 979 AGGTGLNLTGANHVFHFDRWWNPAVENQATDRAFRIGQTKNVEVHKFICAGTLEEKIDEI 1038 Query: 937 IERKKNLSEQVVGSGENWLTEMSNHELKELIELQ 970 IERK ++E VVG+GE WLTE+SN ELK+++ L+ Sbjct: 1039 IERKVQVAENVVGTGEGWLTELSNEELKDILALR 1072 >ref|NP_925212.1| probable helicase [Gloeobacter violaceus] dbj|BAC90207.1| glr2266 [Gloeobacter violaceus PCC 7421] Length = 1008 Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/927 (38%), Positives = 521/927 (56%), Gaps = 68/927 (7%) Query: 53 GGELRYWAAAARFALELMGTGGIVXXXXXXXXXXXXXXXXEQAASAAWSPAFRKEADREL 112 G +LR+W+ AR+ L+L+ + ++ +A W P D+ Sbjct: 128 GDDLRFWSQCARWVLDLLVRAKYLPDLESGDG--------QEIPTARWVPLLDSAVDQAR 179 Query: 113 FLQMAASMPVLALGTHVAEESDLSSREDAGAYVLYSFLQAVMTAEVKRVVAENEGKLVPY 172 + AA +P G A +LS + +L SFL A++ A V+ ++A Sbjct: 180 LKEFAARLP----GACRAATPELSPHQ-----ILKSFLSAMLDARVRTLLACEPPDPRTL 230 Query: 173 KANYRRGYSPLTELWWNSLLTGSRDIPVQGTPXXXXXXXXXXXXXXGSEVPHAETEEARS 232 A R + LL + P +P + + + + RS Sbjct: 231 PAGAVRPW----------LLALAHAQPQLKSPDPETPALAEALATWRAPLSY----QVRS 276 Query: 233 GQLSLGLRLEPPADESEEWRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRYRNIQQ 292 RL+PP + EW+L F +++ ++ + + A +W S +Q+ Sbjct: 277 ---RTCFRLQPPEESQGEWKLHFLLQTGDDPDSLMAAQQVWSS-----------AGELQE 322 Query: 293 QLLSALGRAAKLSPDIQRALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWS 352 L+ LG A+++ ++R L +P P ++ + + FLK + LR+ G V +P + Sbjct: 323 VFLAGLGLASRIFVPVERGLLVPQPTCCTMSTVEAFQFLKAATWRLRDSGFGVLLPESLA 382 Query: 353 REG--RRRIGMKMKMQPPAGGIDGPAQAALGMEQLISFRIEASLGDSDITEDELNALVEA 410 G R R+G+K++ P G +G + LGM+ L++F+ E SL ++ E + L + Sbjct: 383 DAGSLRNRLGLKLEANAP--GRNG---SGLGMQSLLAFKWELSLAGKTLSRAEFDRLAAS 437 Query: 411 GVPYVRFRGEWIEIDPKEVRQVLRYMK-RNESGEMSAAEWMRLEAEDGNERLWKGMSVTG 469 P V+ W+E+ P++VR +++ R + +S + +RL G+ G+ + Sbjct: 438 SEPLVKVNDNWVELRPQDVRAAHSFLQSRKDQVGLSLEDVLRLNF--GDTPKIDGLPIVN 495 Query: 470 METSGLLASLMQG--DMLRHLPVRAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADD 527 ++SG + L++ D + P+ PP GTLRPYQ+ G WLA L G G CLADD Sbjct: 496 FDSSGPIQQLLETLTDQRKLTPIDE-PPGFKGTLRPYQKIGVGWLAFLQKWGLGACLADD 554 Query: 528 MGLGKTVQVITCLLDRALTAPPEEQREPVLILCPTSLLGNWQRELQRFAPSLXXXXXXXX 587 MGLGKTV++I LL E P+L++CPTS++GNW+RE+++F+PSL Sbjct: 555 MGLGKTVELIAFLL---FLKSKNELDGPILLICPTSVMGNWEREIKKFSPSLSVHVHHGA 611 Query: 588 XXXXXXXFAQLAASHEIVLTTYHLAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSVM 647 F + A +I++++Y L RDS+DL V W +VLDEAQ IKN KQ QS+ Sbjct: 612 RRPKGRNFVETAQKKQIIVSSYALVQRDSKDLKRVEWLGLVLDEAQNIKNPDAKQTQSIR 671 Query: 648 KLSAPHRIAMTGTPVENRLGELWSIFHFLNPGYLGTYHSFRQRYVSG--EGGDR--LREL 703 +L+A RIA+TGTPVENRL ELWSI FLNPGYLG + F++R+ + GDR L Sbjct: 672 ELTARFRIALTGTPVENRLAELWSILDFLNPGYLGARNFFQRRFAVPIEKYGDRSSANAL 731 Query: 704 HRLVSPFLLRRLKSDPDISKDLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERSGMA 763 LV PF+LRRLKSDP I +DLPEK E +C LT QAALY+ VVNE L I + +G+ Sbjct: 732 KALVQPFILRRLKSDPQIIQDLPEKQETNVFCPLTPEQAALYERVVNESLAKIEQSTGIQ 791 Query: 764 RRGLVLSSLTKLKQICDHPQLFRGDEGRGQRSEASGKMEVMFEVLDSIAGLGESALIFTQ 823 RRG VL++L KLKQIC+HP + GD+G + SGK+ + E+L+ + E ALIFTQ Sbjct: 792 RRGTVLATLVKLKQICNHPSHYLGDDG--PLANRSGKLSRLGEMLEEVLADEERALIFTQ 849 Query: 824 YVAMGELLVSRLARRYGKAPLFLHGGVPKRERDEMVHAFQ-EGEGPAFFVLSLKAGGVGL 882 + G LL + L+R+ G FL+GG K +R+ M+ FQ + +GP F+LSLKAGGVGL Sbjct: 850 FAEWGHLLQAHLSRQLGSEVFFLYGGTSKNQREAMIERFQSDPQGPRIFILSLKAGGVGL 909 Query: 883 NLTRANHVLHYDRWWNPAVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDELIERKKN 942 NLTRANHV H+DRWWNPAVENQATDR FRIGQ KNVQV+K +C GTLEERI+ LIE KK Sbjct: 910 NLTRANHVFHFDRWWNPAVENQATDRVFRIGQTKNVQVYKYVCTGTLEERINALIESKKA 969 Query: 943 LSEQVVGSGENWLTEMSNHELKELIEL 969 L+EQVV +GENWL++++ +L++L+ L Sbjct: 970 LAEQVVSAGENWLSDLNTDQLRQLLVL 996 >ref|NP_336629.1| helicase, SNF2/RAD54 family [Mycobacterium tuberculosis CDC1551] gb|AAK46443.1| helicase, SNF2/RAD54 family [Mycobacterium tuberculosis CDC1551] Length = 954 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 331/730 (45%), Positives = 447/730 (61%), Gaps = 25/730 (3%) Query: 251 WRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAKLSPDIQR 310 WRL F ++S ++ +PA W + W R Q+ LL+ LGRA+++ P++ Sbjct: 232 WRLEFLLQSTQDPSLLVPAEQAWND-DGSLRRWLDRP---QELLLTELGRASRIFPELVP 287 Query: 311 ALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKMKMQPPAG 370 AL P G+EL A+ Y FL + L E G V +PS W R RR++G+ + P Sbjct: 288 ALRTACPSGLELDADGAYRFLSGTAAVLDEAGFGVLLPSWWDR--RRKLGLVLSAYTPVD 345 Query: 371 GIDGPAQAALGMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDPKEVR 430 G+ G A + G EQL+ FR E ++GD ++E+E+ AL E P +R RG+W+ +D +++R Sbjct: 346 GVVGKA-SKFGREQLVEFRWELAVGDDPLSEEEIAALTETKSPLIRLRGQWVALDTEQLR 404 Query: 431 QVLRYMKRNESGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASLMQGDMLRHLPV 490 + L +++R +G + AE + L A ++ + + VT + G L L+ G L Sbjct: 405 RGLEFLERKPTGRKTTAEILALAASHPDD-VDTPLEVTAVRADGWLGDLLAGAAAASLQP 463 Query: 491 RAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCLLDRALTAPPE 550 P TLRPYQ+RG WLA LS LG G CLADDMGLGKTVQ++ ++ + Sbjct: 464 LDPPDGFTATLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQD 523 Query: 551 EQREPVLILCPTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLAASHEIVLTTYH 610 P L+LCP SL+GNWQ+E RFAP+L ++V++TY Sbjct: 524 RGVGPTLLLCPMSLVGNWQQEAARFAPNLRVYAHHGGARLHGEALRDHLERTDLVVSTYT 583 Query: 611 LAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTGTPVENRLGELW 670 A RD ++LA W+ VVLDEAQ +KN ++ A++V +L A HR+A+TGTP+ENRL ELW Sbjct: 584 TATRDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELW 643 Query: 671 SIFHFLNPGYLGTYHSFRQRYV-------SGEGGDRLRELHRLVSPFLLRRLKSDPDISK 723 SI FLNPG LG+ FR RY E +RLR R P++LRRLK+DP I Sbjct: 644 SIMDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTR---PYILRRLKTDPAIID 700 Query: 724 DLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKLKQICDHP- 782 DLPEK+E+KQYC LT QA+LYQ VV +M+ I G+ RRG VL+++ KLKQ+C+HP Sbjct: 701 DLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPA 760 Query: 783 QLFRGDEGRGQRSEASGKMEVMFEVLDSIAGLGESALIFTQYVAMGELLVSRLARRYGKA 842 QL G+RS GK+ + E+L+ I G+ L FTQ+ ELLV LA R+G+A Sbjct: 761 QLLHDRSPVGRRS---GKVIRLEEILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRA 817 Query: 843 P---LFLHGGVPKRERDEMVHAFQEGEGPAFFVLSLKAGGVGLNLTRANHVLHYDRWWNP 899 +LHGG P++ RDEMV FQ G+GP F+LSLKAGG GLNLT ANHV+H DRWWNP Sbjct: 818 ARDIAYLHGGTPRKRRDEMVARFQSGDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNP 877 Query: 900 AVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDELIERKKNLSEQVVGSGENWLTEMS 959 AVENQATDRAFRIGQ + VQV K IC GTLEE+IDE+IE KK L++ VV GE WLTE+S Sbjct: 878 AVENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIEEKKALADLVVTDGEGWLTELS 937 Query: 960 NHELKELIEL 969 +L+E+ L Sbjct: 938 TRDLREVFAL 947 >ref|NP_855776.1| PROBABLE HELICASE HELZ [Mycobacterium bovis subsp. bovis AF2122/97] emb|CAD96980.1| PROBABLE HELICASE HELZ [Mycobacterium bovis subsp. bovis AF2122/97] Length = 1013 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 330/730 (45%), Positives = 447/730 (61%), Gaps = 25/730 (3%) Query: 251 WRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAKLSPDIQR 310 WRL F ++S ++ +PA W + W R Q+ LL+ LGRA+++ P++ Sbjct: 291 WRLEFLLQSTQDPSLLVPAEQAWND-DGSLRRWLDRP---QELLLTELGRASRIFPELVP 346 Query: 311 ALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKMKMQPPAG 370 AL P G+EL A+ Y FL + L E G V +PS W R RR++G+ + P Sbjct: 347 ALRTACPSGLELDADGAYRFLSGTAAVLDEAGFGVLLPSWWDR--RRKLGLVLSAYTPVD 404 Query: 371 GIDGPAQAALGMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDPKEVR 430 G+ G A + G EQL+ FR E ++GD ++E+E+ AL E P +R RG+W+ +D +++R Sbjct: 405 GVVGKA-SKFGREQLVEFRWELAVGDDPLSEEEIAALTETKSPLIRLRGQWVALDTEQLR 463 Query: 431 QVLRYMKRNESGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASLMQGDMLRHLPV 490 + L +++R +G + AE + L A ++ + + VT + G L L+ G L Sbjct: 464 RGLEFLERKPTGRKTTAEILALAASHPDD-VDTPLEVTAVRADGWLGDLLAGAAAASLQP 522 Query: 491 RAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCLLDRALTAPPE 550 P TLRPYQ+RG WLA LS LG G CLADDMGLGKTVQ++ ++ + Sbjct: 523 LDPPDGFTATLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQD 582 Query: 551 EQREPVLILCPTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLAASHEIVLTTYH 610 P L+LCP SL+GNWQ+E RFAP+L ++V++TY Sbjct: 583 RGVGPTLLLCPMSLVGNWQQEAARFAPNLRVYAHHGGARLHGEALRDHLERTDLVVSTYT 642 Query: 611 LAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTGTPVENRLGELW 670 A RD ++L+ W+ VVLDEAQ +KN ++ A++V +L A HR+A+TGTP+ENRL ELW Sbjct: 643 TATRDIDELSEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELW 702 Query: 671 SIFHFLNPGYLGTYHSFRQRYV-------SGEGGDRLRELHRLVSPFLLRRLKSDPDISK 723 SI FLNPG LG+ FR RY E +RLR R P++LRRLK+DP I Sbjct: 703 SIMDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTR---PYILRRLKTDPAIID 759 Query: 724 DLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKLKQICDHP- 782 DLPEK+E+KQYC LT QA+LYQ VV +M+ I G+ RRG VL+++ KLKQ+C+HP Sbjct: 760 DLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPA 819 Query: 783 QLFRGDEGRGQRSEASGKMEVMFEVLDSIAGLGESALIFTQYVAMGELLVSRLARRYGKA 842 QL G+RS GK+ + E+L+ I G+ L FTQ+ ELLV LA R+G+A Sbjct: 820 QLLHDRSPVGRRS---GKVIRLEEILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRA 876 Query: 843 P---LFLHGGVPKRERDEMVHAFQEGEGPAFFVLSLKAGGVGLNLTRANHVLHYDRWWNP 899 +LHGG P++ RDEMV FQ G+GP F+LSLKAGG GLNLT ANHV+H DRWWNP Sbjct: 877 ARDIAYLHGGTPRKRRDEMVARFQSGDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNP 936 Query: 900 AVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDELIERKKNLSEQVVGSGENWLTEMS 959 AVENQATDRAFRIGQ + VQV K IC GTLEE+IDE+IE KK L++ VV GE WLTE+S Sbjct: 937 AVENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIEEKKALADLVVTDGEGWLTELS 996 Query: 960 NHELKELIEL 969 +L+E+ L Sbjct: 997 TRDLREVFAL 1006 >ref|NP_216617.1| helZ [Mycobacterium tuberculosis H37Rv] pir||B70841 probable helZ protein - Mycobacterium tuberculosis (strain H37RV) emb|CAA17284.1| PROBABLE HELICASE HELZ [Mycobacterium tuberculosis H37Rv] Length = 1013 Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust. Identities = 330/730 (45%), Positives = 446/730 (61%), Gaps = 25/730 (3%) Query: 251 WRLSFWVESREEGEFWLPAAAIWGSREREFTLWGKRYRNIQQQLLSALGRAAKLSPDIQR 310 WRL F ++S ++ +PA W + W R Q+ LL+ LGRA+++ P++ Sbjct: 291 WRLEFLLQSTQDPSLLVPAEQAWND-DGSLRRWLDRP---QELLLTELGRASRIFPELVP 346 Query: 311 ALAMPAPDGVELAAEQLYLFLKESVQPLRERGITVQMPSRWSREGRRRIGMKMKMQPPAG 370 AL P G+EL A+ Y FL + L E G V +PS W R RR++G+ + P Sbjct: 347 ALRTACPSGLELDADGAYRFLSGTAAVLDEAGFGVLLPSWWDR--RRKLGLVLSAYTPVD 404 Query: 371 GIDGPAQAALGMEQLISFRIEASLGDSDITEDELNALVEAGVPYVRFRGEWIEIDPKEVR 430 G+ G A + G EQL+ FR E ++GD ++E+E+ AL E P +R RG+W+ +D +++R Sbjct: 405 GVVGKA-SKFGREQLVEFRWELAVGDDPLSEEEIAALTETKSPLIRLRGQWVALDTEQMR 463 Query: 431 QVLRYMKRNESGEMSAAEWMRLEAEDGNERLWKGMSVTGMETSGLLASLMQGDMLRHLPV 490 + L +++R +G + AE + L A ++ + + VT + G L L+ G L Sbjct: 464 RGLEFLERKPTGRKTTAEILALAASHPDD-VDTPLEVTAVRADGWLGDLLAGAAAASLQP 522 Query: 491 RAVPPDLHGTLRPYQERGFQWLASLSGLGFGVCLADDMGLGKTVQVITCLLDRALTAPPE 550 P TLRPYQ+RG WLA LS LG G CLADDMGLGKTVQ++ ++ + Sbjct: 523 LDPPDGFTATLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQD 582 Query: 551 EQREPVLILCPTSLLGNWQRELQRFAPSLXXXXXXXXXXXXXXXFAQLAASHEIVLTTYH 610 P L+LCP SL+GNW +E RFAP+L ++V++TY Sbjct: 583 RGVGPTLLLCPMSLVGNWPQEAARFAPNLRVYAHHGGARLHGEALRDHLERTDLVVSTYT 642 Query: 611 LAGRDSEDLAGVRWSTVVLDEAQYIKNHRTKQAQSVMKLSAPHRIAMTGTPVENRLGELW 670 A RD ++LA W+ VVLDEAQ +KN ++ A++V +L A HR+A+TGTP+ENRL ELW Sbjct: 643 TATRDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELW 702 Query: 671 SIFHFLNPGYLGTYHSFRQRYV-------SGEGGDRLRELHRLVSPFLLRRLKSDPDISK 723 SI FLNPG LG+ FR RY E +RLR R P++LRRLK+DP I Sbjct: 703 SIMDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTR---PYILRRLKTDPAIID 759 Query: 724 DLPEKLELKQYCTLTETQAALYQGVVNEMLGVIGERSGMARRGLVLSSLTKLKQICDHP- 782 DLPEK+E+KQYC LT QA+LYQ VV +M+ I G+ RRG VL+++ KLKQ+C+HP Sbjct: 760 DLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRGNVLAAMAKLKQVCNHPA 819 Query: 783 QLFRGDEGRGQRSEASGKMEVMFEVLDSIAGLGESALIFTQYVAMGELLVSRLARRYGKA 842 QL G+RS GK+ + E+L+ I G+ L FTQ+ ELLV LA R+G+A Sbjct: 820 QLLHDRSPVGRRS---GKVIRLEEILEEILAEGDRVLCFTQFTEFAELLVPHLAARFGRA 876 Query: 843 P---LFLHGGVPKRERDEMVHAFQEGEGPAFFVLSLKAGGVGLNLTRANHVLHYDRWWNP 899 +LHGG P++ RDEMV FQ G+GP F+LSLKAGG GLNLT ANHV+H DRWWNP Sbjct: 877 ARDIAYLHGGTPRKRRDEMVARFQSGDGPPIFLLSLKAGGTGLNLTAANHVVHLDRWWNP 936 Query: 900 AVENQATDRAFRIGQHKNVQVHKLICQGTLEERIDELIERKKNLSEQVVGSGENWLTEMS 959 AVENQATDRAFRIGQ + VQV K IC GTLEE+IDE+IE KK L++ VV GE WLTE+S Sbjct: 937 AVENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIEEKKALADLVVTDGEGWLTELS 996 Query: 960 NHELKELIEL 969 +L+E+ L Sbjct: 997 TRDLREVFAL 1006 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,352,405,600 Number of extensions: 54472647 Number of successful extensions: 128232 Number of sequences better than 1.0e-05: 1090 Number of HSP's gapped: 124602 Number of HSP's successfully gapped: 1438 Length of query: 975 Length of database: 757,237,578 Length adjustment: 135 Effective length of query: 840 Effective length of database: 390,699,213 Effective search space: 328187338920 Effective search space used: 328187338920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)