BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0029.p (727 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622177.1| Glycosyltransferases involved in cell wall biog... 157 9e-37 ref|NP_681159.1| ORF_ID:tll0369~probable glycosyltransferase [Th... 140 8e-32 ref|NP_349900.1| Glycosyltransferase fused to TPR-repeat domain ... 139 2e-31 gb|AAQ23689.1| unknown [Geobacillus stearothermophilus] 138 4e-31 ref|ZP_00107986.1| COG0457: FOG: TPR repeat [Nostoc punctiforme] 130 2e-28 >ref|NP_622177.1| Glycosyltransferases involved in cell wall biogenesis [Thermoanaerobacter tengcongensis] gb|AAM23781.1| Glycosyltransferases involved in cell wall biogenesis [Thermoanaerobacter tengcongensis] Length = 654 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 154/317 (48%), Gaps = 5/317 (1%) Query: 5 TLGVHLIIRNEAALLPQCLDSLHGAADEIVIVDTGSTDNSAAIAASYGAKVYHMNWNNDF 64 TL + LI +NE + +C++S+ DEIV+VDTGSTD + IA S+GAKV + W +DF Sbjct: 18 TLSLCLITKNEEKNISRCINSVKDIVDEIVVVDTGSTDRTIEIAKSFGAKVIQIKWEDDF 77 Query: 65 SAARNTGLSHAETDWILVLDAD-EILKTPVGAITEMLRNTEAMAFTVNIENWIGSLPEDR 123 S ARNT + A DWIL LDAD EI K V I +L + A+ N+ GS Sbjct: 78 SKARNTAIESATGDWILFLDADEEIKKEDVSKIKSLLYDDTVEAYLFKFVNYAGSSINSG 137 Query: 124 LT--HNAIRLFRNGAGYSFQGIIHEGLDASVIGKHGASVIRSSGIEIIHLGYLPGIMAQK 181 LT + RLFRN + +HE L I ++ + + + + I+H GYL I +K Sbjct: 138 LTEINYNYRLFRNNGKLKYIYPVHENLRN--IEENRPPIAKKADVTILHYGYLADIRKEK 195 Query: 182 DKISRNEQLLRRALAKDPGNDFYSYNLAVTCCQNGQLEEAAELLTRTISRAPLQASYRPS 241 +K R +L+ + L P + F NLAV G ++A + L + + Sbjct: 196 NKSERYIKLISKYLESHPEDKFQHANLAVEYFNIGDYQKALKHLLIATKGMDVNSVNATR 255 Query: 242 MIRDLAKIQLSLNHTQAVNALLARELPRYSDYPDLHFIQGQSWESQGLTERAFQSYQRAA 301 ++R L + L ++ Y D PD F++G + Q E+A ++++ + Sbjct: 256 LLRYLIGCYIGLKDYSTALKIIKDAKDYYKDIPDFSFLEGLMYMDQKRYEKAIEAFKESL 315 Query: 302 AGSEEPAAPVDASSTGA 318 + E + TG+ Sbjct: 316 SIGEYDGLFITMGGTGS 332 >ref|NP_681159.1| ORF_ID:tll0369~probable glycosyltransferase [Thermosynechococcus elongatus BP-1] dbj|BAC07921.1| ORF_ID:tll0369~probable glycosyltransferase [Thermosynechococcus elongatus BP-1] Length = 365 Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 114/220 (51%), Gaps = 9/220 (4%) Query: 10 LIIRNEAALLPQCLDSLHGAADEIVIVDTGSTDNSAAIAASYGAKVYHMNWNNDFSAARN 69 +I+R+EA LPQCL S+ G DE VIVDTGS D + AIA +GA+VY + W +DF+AARN Sbjct: 7 MIVRDEATRLPQCLASVAGVVDEAVIVDTGSQDETVAIARDWGARVYEIPWQDDFAAARN 66 Query: 70 TGLSHAETDWILVLDADEILKTPVGAITEMLRNTEAMAFTVNIENWIGSLPEDRLTHNAI 129 L + T+W+LVLDADE L A+ + + + +G +P Sbjct: 67 VALGYVTTEWVLVLDADETLTPAFAALLPQICQHPNWLVVILLRQELGVIPP---YTPVA 123 Query: 130 RLFRNGAGYSFQGIIHEGLDASVIGKHGA----SVIRSSGIEIIHLGYLPGIMAQKDKIS 185 RLFR SFQ HE +D SV+ + SG+ I+H GYL QK + Sbjct: 124 RLFRRHPAISFQRPYHETIDDSVLALQQREPHWQIGHVSGVAIVHRGYLGDQRQQKQE-- 181 Query: 186 RNEQLLRRALAKDPGNDFYSYNLAVTCCQNGQLEEAAELL 225 R E+++RR L + P + + LA G E+A L Sbjct: 182 RAERIMRRHLEQHPEDAYLWSKLAGVYLARGNWEQAQRCL 221 >ref|NP_349900.1| Glycosyltransferase fused to TPR-repeat domain [Clostridium acetobutylicum] pir||E97306 glycosyltransferase fused to TPR-repeat domain [imported] - Clostridium acetobutylicum gb|AAK81240.1| Glycosyltransferase fused to TPR-repeat domain [Clostridium acetobutylicum] Length = 593 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 147/308 (47%), Gaps = 9/308 (2%) Query: 6 LGVHLIIRNEAALLPQCLDSLHGAADEIVIVDTGSTDNSAAIAASYGAKVYHMNWNNDFS 65 + + +I++NE L QCLDS+ DEI+IVDTGSTD + IA +GA++++ WNN FS Sbjct: 5 ISLCMIVKNEEKYLFQCLDSVKDIVDEIIIVDTGSTDKTVEIAKKFGAEIHYFMWNNSFS 64 Query: 66 AARNTGLSHAETDWILVLDA-DEILKTPVGAITEMLRNT--EAMAFTVNIENWIGSLPED 122 ARN L +A DWI ++D DE K E+++N E + ++ G + Sbjct: 65 DARNESLKYATKDWIFIMDGDDEFSKDDKEKFKELVKNNLKEDCLYYFETLSYCGEFVDS 124 Query: 123 RLTHNAI--RLFRNGAGYSFQGIIHEGLDASVIGKHGASVIRSSGIEIIHLGYLPGIMAQ 180 + RLF+N GY ++GI+H L + K +VI + I I H GYL + + Sbjct: 125 SNISVNLNPRLFKNNYGYKYEGIVHNQLINT--EKEIKNVIYN--IRIYHYGYLEDVSKK 180 Query: 181 KDKISRNEQLLRRALAKDPGNDFYSYNLAVTCCQNGQLEEAAELLTRTISRAPLQASYRP 240 K+K RN LL++ L ++P + F +N+ G L++A + + Sbjct: 181 KNKRGRNIPLLKKQLKENPDDRFAHFNIGNEYYAIGDLQKALTHYCEAYKDFNPSSGFGF 240 Query: 241 SMIRDLAKIQLSLNHTQAVNALLARELPRYSDYPDLHFIQGQSWESQGLTERAFQSYQRA 300 +I L + + L Y + D++F++ +E+ A ++ +R Sbjct: 241 VLITRLIVTNFGIGKHEKAIEFADIGLEYYPNATDIYFLKALIYEATRRPTLAIKALKRC 300 Query: 301 AAGSEEPA 308 E P+ Sbjct: 301 IEMGEPPS 308 >gb|AAQ23689.1| unknown [Geobacillus stearothermophilus] Length = 355 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 141/280 (50%), Gaps = 18/280 (6%) Query: 5 TLGVHLIIRNEAALLPQCLDSLHGAADEIVIVDTGSTDNSAAIAASYGAKVYHMNWNNDF 64 TL + +I++NE L +CL S+ G DE+VIVDTGSTD + IA ++GAKV+ W NDF Sbjct: 3 TLALVMIVKNEERHLSRCLQSVKGIVDEMVIVDTGSTDRTKEIAYAFGAKVFDFEWVNDF 62 Query: 65 SAARNTGLSHAETDWILVLDADEILKTPVGAITEML--RNTEAMAFTVNIENWIGSLPED 122 S ARN L + +DW VLDADE + G++ +N + + I+ +I E Sbjct: 63 STARNYALEKSTSDWNFVLDADEYIMNDCGSVIRNFIEKNDKVIGRIKRIDEFIQD-GEK 121 Query: 123 RLTHNAI-RLFRNGAGYSFQGIIHEGLDASVIGKHGASVIRSSGIEIIHLGYLPGIMAQK 181 R + + RL G Y G +HE +++ + + + IE+ H GY+ Sbjct: 122 RYAQSYLSRLLPKGVKYV--GRVHEQVNSDLPRE-------NLDIEVYHDGYV-----YT 167 Query: 182 DKISRNEQLLRRALAKDPGNDFYSYNLAVTCCQNGQLEEAAELLTRTISRAPLQASYRPS 241 DK RN +LL L +DP ND+ Y + QL++A ++ + L++ YR S Sbjct: 168 DKTDRNLKLLLLELERDPLNDYVLYQVGKQYKLRQQLQQAESYFEKSYNLVALKSWYRHS 227 Query: 242 MIRDLAKIQLSLNHTQAVNALLARELPRYSDYPDLHFIQG 281 +I D + + L+ E R++D PD HF G Sbjct: 228 LIIDYLYTIIGNKSFEKGLKLIETERDRFADSPDFHFACG 267 >ref|ZP_00107986.1| COG0457: FOG: TPR repeat [Nostoc punctiforme] Length = 395 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 123/239 (51%), Gaps = 20/239 (8%) Query: 5 TLGVHLIIRNEAALLPQCLDSLHGAADEIVIVDTGSTDNSAAIAASYGAKVYHMNWNNDF 64 +L + +I++NEAA LP+CL+S+ DE+V++DTGS D + IA GAKV+H W+NDF Sbjct: 2 SLSLCMIVKNEAATLPKCLNSVRKVVDEMVVLDTGSIDRTPNIAQQLGAKVHHFKWSNDF 61 Query: 65 SAARNTGLSHAETDWILVLDADEILKTP--VGAITEMLRNTEAMAFTVNIENWIGSLPED 122 SAARN L + DW+LVLDADE L TP V + E + E + + + +G+ E Sbjct: 62 SAARNAALKYVTGDWVLVLDADETL-TPGIVPQLREAIARDEYLLINL-VRQEVGA--EQ 117 Query: 123 RLTHNAIRLFRNGAGYSFQGIIHEGLDASVIGKHGASVIRSS---------GIEIIHLGY 173 RLFRN F H +D SV ++++ G+ ++H GY Sbjct: 118 SPYSLVSRLFRNHPDIRFDRPYHALVDDSV-----SAIVNKEPHWQIGYLPGVALVHTGY 172 Query: 174 LPGIMAQKDKISRNEQLLRRALAKDPGNDFYSYNLAVTCCQNGQLEEAAELLTRTISRA 232 +AQ +K ++ + LA P + + L + G++ E ELL IS A Sbjct: 173 QKSAIAQNNKYAKAATAMEGFLATHPDDPYVCSKLGALYVETGKITEGMELLRHGISVA 231 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 994,792,580 Number of extensions: 38991666 Number of successful extensions: 99722 Number of sequences better than 1.0e-05: 149 Number of HSP's gapped: 99895 Number of HSP's successfully gapped: 149 Length of query: 727 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 594 Effective length of database: 396,129,411 Effective search space: 235300870134 Effective search space used: 235300870134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)