BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0021.p
         (228 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_171825.3| expressed protein [Arabidopsis thaliana] >gi|40...    57   3e-07
ref|NP_692100.1| hypothetical protein OB1179 [Oceanobacillus ihe...    54   4e-06
gb|AAD09009.1| unknown [Staphylococcus carnosus]                       53   6e-06

>ref|NP_171825.3| expressed protein [Arabidopsis thaliana]
 gb|AAR92258.1| At1g03260 [Arabidopsis thaliana]
 gb|AAS47670.1| At1g03260 [Arabidopsis thaliana]
          Length = 274

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 21/170 (12%)

Query: 25  PMTETINAWIDWLLQSLGLSGPYIL-LVTIPLTVLQSLFGFFPLAVLIVLHVSVFNVIGG 83
           P+ + +  ++ W+ + LG  GP  L L  IPLT+             + +  SV  + GG
Sbjct: 31  PVEQKLKDFLLWIKEDLGPFGPLALALAYIPLTI-------------VAVPASVLTLGGG 77

Query: 84  ML----VSWLACNVGAMLSYXXXXXXXXXXXXXXXXSKLKRYDKWQRY---LDRYGVWTL 136
            L    V ++A ++GA L                  SK+K Y K+Q     + + G   +
Sbjct: 78  YLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYVTSKIKHYPKFQAVSVAIQKSGFKIV 137

Query: 137 VLLRTVPIMPSNVINFMSAVSPMKVPAFIWGTVLGNLSYIWLFGTLGSTL 186
           +LLR VPI+P N++N++ +V+P+++  ++  T LG +   +    +G+TL
Sbjct: 138 LLLRVVPILPFNMLNYLLSVTPVRLGEYMLATWLGMMPITFALVYVGTTL 187


>ref|NP_692100.1| hypothetical protein OB1179 [Oceanobacillus iheyensis HTE831]
 dbj|BAC13135.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 212

 Score = 53.5 bits (127), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 31  NAWIDWLLQSLGLSGPYILLVTIPLTVLQSLFGFFPLAVLIVLHVSVFNVIGGMLVSWLA 90
             +I  LL      GP   L  I L  L++   F PL V ++ + + + +  G L SW+ 
Sbjct: 21  EEFISQLLNQYEGLGP---LPGILLPFLEAFLPFLPLIVFVLGNAAAYGLFQGFLYSWIG 77

Query: 91  CNVGAMLSYXXXXXXXXX--XXXXXXXSKLKRYDKWQRYLDRYGVWTLVLLRTVPIMPSN 148
             VGA++ +                  S++K+  +W   +D++G   L +L   P  PS+
Sbjct: 78  ATVGAIVVFLLIRKLVNTRLLQKIRKNSQVKKITQW---VDKHGFGPLFILLCFPFSPSS 134

Query: 149 VINFMSAVSPMKVPAFIWGTVLGNLSYIWLFGTLGSTLI 187
           +IN ++ +S + +  FI    LG    I+    +GS+++
Sbjct: 135 IINVVAGLSKINMYQFILAVCLGKTVMIFSISYVGSSIM 173


>gb|AAD09009.1| unknown [Staphylococcus carnosus]
          Length = 225

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 16  AFRKMKGGCPMTETINAWIDWLLQSLGLSGPYILLVTIPLTVLQSLFGFFPLAVLIVLHV 75
           A  +  GG      + +W    + S+G  G Y+L   +P   ++S     PL V + ++V
Sbjct: 30  ALHREMGGYMSAHQVESW----MHSMGDFG-YVLGFLLPF--IESFIPVLPLFVFVFVNV 82

Query: 76  SVFNVIGGMLVSWLACNVGAMLSYXXXXXXXXXXXXXXXXSKLKRYDKWQRYLDRYGVWT 135
             F +  G++VSWL   +G+ + +                ++ K   K+  ++++ GV  
Sbjct: 83  DTFGLFLGIIVSWLGTFLGSFVVFLIVRAFANTNVMDKVKNR-KDVRKFLNFVNKQGVTP 141

Query: 136 LVLLRTVPIMPSNVINFMSAVSPMKVPAFIWGTVLGNLSYIWLFGTLGSTL 186
           + ++   P  PS ++N ++ +S MKV  F     + NL  + L G LG  +
Sbjct: 142 IFIMLCFPFTPSALMNVVAGLSKMKVRTFFLVLAVSNLIAMALTGVLGRDM 192


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.328    0.142    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 313,832,612
Number of extensions: 11206853
Number of successful extensions: 37762
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 37807
Number of HSP's successfully gapped: 13
Length of query: 228
Length of database: 757,237,578
Length adjustment: 121
Effective length of query: 107
Effective length of database: 428,710,599
Effective search space: 45872034093
Effective search space used: 45872034093
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)