BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0018.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||I40535 probable glycine betaine/proline ABC transporter - B... 506 e-142 ref|NP_388180.1| glycine betaine ABC transporter (ATP-binding pr... 506 e-142 ref|NP_694378.1| glycine betaine ABC transporter ATP-binding pro... 497 e-139 ref|NP_845135.1| glycine betaine/L-proline ABC transporter, ATP-... 471 e-131 ref|NP_979120.1| glycine betaine/L-proline ABC transporter, ATP-... 471 e-131 >pir||I40535 probable glycine betaine/proline ABC transporter - Bacillus subtilis gb|AAC43455.1| ATPase Length = 418 Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust. Identities = 237/387 (61%), Positives = 313/387 (80%) Query: 4 IEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMGLSG 63 I+V++++K+FG +A+ +LA G +K++I + TVGVN+ADF + +GEIFVIMGLSG Sbjct: 10 IKVEKVSKIFGKQTKKAVQMLANGKTKKEILKATGSTVGVNQADFEVYDGEIFVIMGLSG 69 Query: 64 SGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHRTVL 123 SGKSTLVR+LNRLIEPT G + + M+ +QLR+ RRK I MVFQKFALFPHRT+L Sbjct: 70 SGKSTLVRMLNRLIEPTAGNIYIDGDMITNMSKDQLREVRRKKISMVFQKFALFPHRTIL 129 Query: 124 ANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLANDPD 183 N EYGLE+QGV+K+ER + A+++L+LVGL+G+EH +PDQLSGGMQQRVGLAR L NDPD Sbjct: 130 ENTEYGLELQGVDKQERQQKALESLKLVGLEGFEHQYPDQLSGGMQQRVGLARALTNDPD 189 Query: 184 ILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDGVIV 243 ILLMDEAFSALDPLIRKDMQ ELL+L + KTI+FITHDLDEALRIGDRI LMKDG IV Sbjct: 190 ILLMDEAFSALDPLIRKDMQDELLDLHDNVGKTIIFITHDLDEALRIGDRIVLMKDGNIV 249 Query: 244 QIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRDSGV 303 QIGTPEEIL+ P+N+YVE+FVEDVDLSKVLTA H+M++ E +R ++GPRVAL LM++ G+ Sbjct: 250 QIGTPEEILMNPSNEYVEKFVEDVDLSKVLTAGHIMKRAETVRIDKGPRVALTLMKNLGI 309 Query: 304 SSLYVADKEMKLQGVVTAEDAAQALKENRPILEVMRREIPRVSPDTLLNDLFELMSETHL 363 SS+Y DK+ KL GV+ A DA +A + + + +++ E V +T L ++F+++S+ ++ Sbjct: 310 SSIYAVDKQKKLLGVIYASDAKKAAESDLSLQDILNTEFTTVPENTYLTEIFDVVSDANI 369 Query: 364 PVAVVDEADKLKGIVIKGAVLSALAGN 390 P+AVVDE ++KGIV++GA++ ALAGN Sbjct: 370 PIAVVDEKQRMKGIVVRGALIGALAGN 396 >ref|NP_388180.1| glycine betaine ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P46920|OPAA_BACSU Glycine betaine transport ATP-binding protein opuAA (Quaternary-amine-transporting ATPase) dbj|BAA08932.1| glycine betain/L-proline transport ATPase [Bacillus subtilis] emb|CAB12092.1| glycine betaine ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 418 Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust. Identities = 237/387 (61%), Positives = 313/387 (80%) Query: 4 IEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMGLSG 63 I+V++++K+FG +A+ +LA G +K++I + TVGVN+ADF + +GEIFVIMGLSG Sbjct: 10 IKVEKVSKIFGKQTKKAVQMLANGKAKKEILKATGSTVGVNQADFEVYDGEIFVIMGLSG 69 Query: 64 SGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHRTVL 123 SGKSTLVR+LNRLIEPT G + + M+ +QLR+ RRK I MVFQKFALFPHRT+L Sbjct: 70 SGKSTLVRMLNRLIEPTAGNIYIDGDMITNMSKDQLREVRRKKISMVFQKFALFPHRTIL 129 Query: 124 ANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLANDPD 183 N EYGLE+QGV+K+ER + A+++L+LVGL+G+EH +PDQLSGGMQQRVGLAR L NDPD Sbjct: 130 ENTEYGLELQGVDKQERQQKALESLKLVGLEGFEHQYPDQLSGGMQQRVGLARALTNDPD 189 Query: 184 ILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDGVIV 243 ILLMDEAFSALDPLIRKDMQ ELL+L + KTI+FITHDLDEALRIGDRI LMKDG IV Sbjct: 190 ILLMDEAFSALDPLIRKDMQDELLDLHDNVGKTIIFITHDLDEALRIGDRIVLMKDGNIV 249 Query: 244 QIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRDSGV 303 QIGTPEEIL+ P+N+YVE+FVEDVDLSKVLTA H+M++ E +R ++GPRVAL LM++ G+ Sbjct: 250 QIGTPEEILMNPSNEYVEKFVEDVDLSKVLTAGHIMKRAETVRIDKGPRVALTLMKNLGI 309 Query: 304 SSLYVADKEMKLQGVVTAEDAAQALKENRPILEVMRREIPRVSPDTLLNDLFELMSETHL 363 SS+Y DK+ KL GV+ A DA +A + + + +++ E V +T L ++F+++S+ ++ Sbjct: 310 SSIYAVDKQKKLLGVIYASDAKKAAESDLSLQDILNTEFTTVPENTYLTEIFDVVSDANI 369 Query: 364 PVAVVDEADKLKGIVIKGAVLSALAGN 390 P+AVVDE ++KGIV++GA++ ALAGN Sbjct: 370 PIAVVDEKQRMKGIVVRGALIGALAGN 396 >ref|NP_694378.1| glycine betaine ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC15412.1| glycine betaine ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 399 Score = 497 bits (1280), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/393 (61%), Positives = 320/393 (81%), Gaps = 2/393 (0%) Query: 1 MAIIEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMG 60 M ++E K L+K+FG + +++ +L QG +KE+I ++ TVGVNRA F +EEGEIFVIMG Sbjct: 1 MPVVETKDLSKIFGKNIKQSIKMLDQGLTKEEILKKTGNTVGVNRASFSVEEGEIFVIMG 60 Query: 61 LSGSGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHR 120 LSGSGKSTLVRLLNRLIEP+ G +L +D+ KM+ ++LRQ RR+ +GMVFQ+FALFPHR Sbjct: 61 LSGSGKSTLVRLLNRLIEPSEGSILIEGQDLAKMDKKELRQVRREKLGMVFQQFALFPHR 120 Query: 121 TVLANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLAN 180 T+L NAE+GLEVQ ++K ER + A +AL+LVGL + H P QLSGGMQQRVGLAR LAN Sbjct: 121 TILQNAEFGLEVQKIDKHERHKRAEEALKLVGLGDYIHQKPGQLSGGMQQRVGLARALAN 180 Query: 181 DPDILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDG 240 DP +LLMDEAFSALDPLIRK+MQ EL++LQS MKKTI+FITHDLDEALR+GDRIALMKDG Sbjct: 181 DPKVLLMDEAFSALDPLIRKEMQDELIDLQSSMKKTIIFITHDLDEALRLGDRIALMKDG 240 Query: 241 VIVQIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPER-GPRVALQLMR 299 IVQIG+PEEIL+ PAN YVE+FVEDVD SK+LTA H+M++PE I ++ GPR AL+ MR Sbjct: 241 AIVQIGSPEEILMNPANDYVEKFVEDVDRSKILTAHHIMKRPETINIDKHGPRAALERMR 300 Query: 300 DSGVSSLYVADKEMKLQGVVTAEDAAQALK-ENRPILEVMRREIPRVSPDTLLNDLFELM 358 G+SS+ V D + +L+G VTA+DA+ A K E+ I ++++ +I +VSPDT + ++F ++ Sbjct: 301 KEGISSILVVDGKRRLKGYVTADDASAARKQESNSIEDILKTDILKVSPDTAMQEIFSMI 360 Query: 359 SETHLPVAVVDEADKLKGIVIKGAVLSALAGNA 391 ++ +P+AVVD+ D+L+GI+++GAVL+ALAG+ Sbjct: 361 YDSPVPLAVVDKDDRLEGIIVRGAVLAALAGDG 393 >ref|NP_845135.1| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP26621.1| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 401 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 225/387 (58%), Positives = 304/387 (78%) Query: 4 IEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMGLSG 63 + V+ +TKVFG RAL LL +G SK +I +E + VGV +A F + GEIFVIMGLSG Sbjct: 6 VRVENVTKVFGKHPQRALSLLKEGKSKSEILKETGMNVGVKKATFEVYSGEIFVIMGLSG 65 Query: 64 SGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHRTVL 123 SGKSTLVR+LN+LI+PT G + +D+ M E+LR+ RR + MVFQKFALFPHRTVL Sbjct: 66 SGKSTLVRMLNQLIKPTAGHIYIDGEDIATMGKEELRRVRRTKMSMVFQKFALFPHRTVL 125 Query: 124 ANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLANDPD 183 N YGLE+QGV +ER + A+++L+LVGL + ++P QLSGGMQQRVG+AR L NDPD Sbjct: 126 QNVAYGLEIQGVPVEEREKKALESLKLVGLDHHKDNYPSQLSGGMQQRVGIARALTNDPD 185 Query: 184 ILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDGVIV 243 +LLMDE+FSALDPLIRK+MQ ELLELQ KM+KTI+FITHDLDEALRIGDRIALMKDG +V Sbjct: 186 VLLMDESFSALDPLIRKEMQDELLELQDKMEKTIIFITHDLDEALRIGDRIALMKDGEVV 245 Query: 244 QIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRDSGV 303 QIGTPEEI++ PAN++VE+FV DV+L KV+TA ++++PE + +RGPRVALQ+MR++GV Sbjct: 246 QIGTPEEIMMSPANEFVEKFVADVNLGKVITAESILKRPETLLIDRGPRVALQIMRNAGV 305 Query: 304 SSLYVADKEMKLQGVVTAEDAAQALKENRPILEVMRREIPRVSPDTLLNDLFELMSETHL 363 S++YV +K+ + G++TA+DA++A+++ PI +++ +IP V DTLL + + M+E Sbjct: 306 STVYVVNKKYEFLGILTADDASKAVQKQWPIADLLLNDIPHVYLDTLLEETYAKMAEMKY 365 Query: 364 PVAVVDEADKLKGIVIKGAVLSALAGN 390 P+ V+DE +L+GI+ + +V+ ALAGN Sbjct: 366 PLPVIDEKKRLRGIIKRESVIQALAGN 392 >ref|NP_979120.1| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS41728.1| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 401 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/387 (58%), Positives = 303/387 (78%) Query: 4 IEVKQLTKVFGHDAVRALPLLAQGWSKEKIAREAKLTVGVNRADFRIEEGEIFVIMGLSG 63 + V+ +TKVFG RAL LL +G SK +I +E + VGV +A F + GEIFVIMGLSG Sbjct: 6 VRVENVTKVFGKHPQRALTLLKEGKSKSEILKETGMNVGVKKATFEVYTGEIFVIMGLSG 65 Query: 64 SGKSTLVRLLNRLIEPTGGQVLFRDKDVVKMNPEQLRQFRRKNIGMVFQKFALFPHRTVL 123 SGKSTLVR+LN+LI PT G + +D+ M E+LR+ RR + MVFQKFALFPHRTVL Sbjct: 66 SGKSTLVRMLNQLIRPTAGHIYIDGEDIATMGKEELRRVRRTKMSMVFQKFALFPHRTVL 125 Query: 124 ANAEYGLEVQGVEKKERTRLAMQALELVGLKGWEHHHPDQLSGGMQQRVGLARGLANDPD 183 N YGLE+QGV +ER R A+++L+LVGL + ++P QLSGGMQQRVG+AR L NDPD Sbjct: 126 QNVAYGLEIQGVPVEERERKALESLKLVGLDHHKDNYPSQLSGGMQQRVGIARALTNDPD 185 Query: 184 ILLMDEAFSALDPLIRKDMQQELLELQSKMKKTIVFITHDLDEALRIGDRIALMKDGVIV 243 +LLMDE+FSALDPLIRK+MQ ELLELQ KM+KTI+FITHDLDEALRIGDRIALMKDG +V Sbjct: 186 VLLMDESFSALDPLIRKEMQDELLELQDKMEKTIIFITHDLDEALRIGDRIALMKDGEVV 245 Query: 244 QIGTPEEILIQPANKYVERFVEDVDLSKVLTAAHVMRQPEMIRPERGPRVALQLMRDSGV 303 QIGTPEEI++ PAN++VE+FV DV+L KV+TA ++++PE + +RGPRVALQ+MR++GV Sbjct: 246 QIGTPEEIMMSPANEFVEKFVADVNLGKVITAESILKRPETLLIDRGPRVALQIMRNAGV 305 Query: 304 SSLYVADKEMKLQGVVTAEDAAQALKENRPILEVMRREIPRVSPDTLLNDLFELMSETHL 363 S++YV +K+ + G++TA+DA++A+++ PI +++ +IP V DTLL + + M+E Sbjct: 306 STVYVVNKKYEFLGILTADDASKAVQKQWPIADLLLTDIPHVYLDTLLEETYAKMAEMKY 365 Query: 364 PVAVVDEADKLKGIVIKGAVLSALAGN 390 P+ V+DE +L+GI+ + +V+ ALAGN Sbjct: 366 PLPVIDEKKRLRGIIKRESVIQALAGN 392 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 542,362,297 Number of extensions: 21577222 Number of successful extensions: 143433 Number of sequences better than 1.0e-05: 20478 Number of HSP's gapped: 119569 Number of HSP's successfully gapped: 21773 Length of query: 399 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 271 Effective length of database: 409,704,906 Effective search space: 111030029526 Effective search space used: 111030029526 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)