BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0009.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00182826.1| hypothetical protein Exigu180901 [Exiguobacte... 399 e-110 ref|NP_830220.1| Ferrichrome transport system permease protein f... 393 e-108 ref|NP_654280.1| FecCD_family, FecCD transport family [Bacillus ... 393 e-108 ref|NP_976777.1| iron compound ABC transporter, permease protein... 387 e-106 ref|NP_347424.1| Ferrichrome transport permease [Clostridium ace... 315 8e-85 >ref|ZP_00182826.1| hypothetical protein Exigu180901 [Exiguobacterium sp. 255-15] Length = 335 Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/328 (59%), Positives = 246/328 (75%) Query: 8 RKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRILI 67 R+QR T + +GLG +S+S+DRLLP LFG G+FKEDFVLFS+RLPRI+I Sbjct: 8 RRQRLIFLLLSLLLLGTIVVSIGLGPASVSYDRLLPTLFGQGSFKEDFVLFSLRLPRIII 67 Query: 68 TXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPLA 127 T Q +TRN+LADPGIIGIN+GAGVAVA+FFLYFPV GSFIY LP+A Sbjct: 68 TLLAGMALALSGSILQGITRNELADPGIIGINTGAGVAVAIFFLYFPVDVGSFIYGLPVA 127 Query: 128 AFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIAK 187 AF+GA++TA IY SY R RGL PIR++L GVGFS+ALSG+M+++ISS +R KVDFIAK Sbjct: 128 AFLGALVTAVAIYALSYDRNRGLQPIRLILTGVGFSMALSGIMVILISSTKREKVDFIAK 187 Query: 188 WIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXXX 247 W+AGNIWGTD+ F++ALLPWL++LIPFTL+K+++LNLL+LNE A+GVG+++E+ER Sbjct: 188 WLAGNIWGTDWTFVYALLPWLIVLIPFTLYKANKLNLLALNEPVAIGVGVSIEKERIQLL 247 Query: 248 XXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGRN 307 TGGI+FIGLMAPHIA++LVGPR+Q F+P+ DT+GRN Sbjct: 248 LTAVALAASAVSVTGGISFIGLMAPHIARALVGPRHQWFLPIALLIGGWLLVLADTIGRN 307 Query: 308 IADPDGIPAGIMVSLIGVPYFAYLLLRK 335 IA PDG+PAGI+V+LIG PYF YLLL+K Sbjct: 308 IAGPDGVPAGIVVALIGAPYFIYLLLKK 335 >ref|NP_830220.1| Ferrichrome transport system permease protein fhuG [Bacillus cereus ATCC 14579] gb|AAP07421.1| Ferrichrome transport system permease protein fhuG [Bacillus cereus ATCC 14579] Length = 335 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/329 (58%), Positives = 241/329 (73%) Query: 7 VRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRIL 66 +RKQR T + GMGLG +SLS+DRLLP L G GTFKE+FVL+S+RLPRI+ Sbjct: 6 LRKQRLIILALLIVIITTIVVGMGLGSASLSYDRLLPTLMGQGTFKEEFVLYSLRLPRIV 65 Query: 67 ITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPL 126 IT Q +TRNDLA+PGI+GINSGAGVAVA+FFLYFP+ GSF+Y LP+ Sbjct: 66 ITLLAGMALALSGAILQGITRNDLAEPGILGINSGAGVAVAIFFLYFPIDVGSFLYLLPV 125 Query: 127 AAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIA 186 FIGA +TA LIY+FSYS++ GL PIR+ L G+GF+ ALSG MIV+ISSA+R KVDFI+ Sbjct: 126 VGFIGAFLTAVLIYVFSYSKSTGLQPIRLTLTGIGFAFALSGAMIVLISSADRMKVDFIS 185 Query: 187 KWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXX 246 KWIAGNIWG D+ F+ A+LPWL++ IPF +K+++LN+L+LNE A+GVG+ +E+ER Sbjct: 186 KWIAGNIWGDDWIFVLAMLPWLIVFIPFVFYKANRLNILALNEPVAIGVGIEIEKERRYL 245 Query: 247 XXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGR 306 TGGI+FIGLMAPHIAKSLVGPR+Q+F+P+ DT+GR Sbjct: 246 LVAAVALAAAAVSVTGGISFIGLMAPHIAKSLVGPRHQIFMPIALLIGGWLLLLADTIGR 305 Query: 307 NIADPDGIPAGIMVSLIGVPYFAYLLLRK 335 NI DP+GIPAGI+V+LIG PYF YLLL+K Sbjct: 306 NIVDPNGIPAGIVVALIGAPYFMYLLLKK 334 >ref|NP_654280.1| FecCD_family, FecCD transport family [Bacillus anthracis A2012] ref|NP_842896.1| iron compound ABC transporter, permease protein [Bacillus anthracis str. Ames] gb|AAP24382.1| iron compound ABC transporter, permease protein [Bacillus anthracis str. Ames] Length = 335 Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/329 (58%), Positives = 245/329 (74%) Query: 7 VRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRIL 66 +RKQR T + GMGLG +SLS+DRLLP+L G GTFKE+FVL+S+RLPRI+ Sbjct: 6 LRKQRLIILALLILTITTIVIGMGLGSASLSYDRLLPILMGQGTFKEEFVLYSLRLPRII 65 Query: 67 ITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPL 126 IT Q +TRNDLA+PGI+GINSGAGVAVA+FFLYFP+ GSF+Y LP+ Sbjct: 66 ITLLAGMALALSGAILQGITRNDLAEPGILGINSGAGVAVAIFFLYFPIDVGSFLYLLPV 125 Query: 127 AAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIA 186 FIGA +TA LIY+FSYS++ GL P+R+ L G+GF+ ALSG+MIV+ISSA+R KVDFI+ Sbjct: 126 VGFIGAFLTAVLIYVFSYSKSSGLQPVRLTLTGIGFAFALSGMMIVLISSADRMKVDFIS 185 Query: 187 KWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXX 246 KWIAGNIWG D+ FI+A+LPWL++LIPF +K+++LN+L+LNE A+GVG+ +E+ER Sbjct: 186 KWIAGNIWGDDWIFIFAMLPWLIVLIPFVFYKANRLNILALNEPVAIGVGIEIEKERRYL 245 Query: 247 XXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGR 306 TGGI+FIGLMAPHIAKSLVGPR+Q+F+P+ DT+GR Sbjct: 246 LVAAVALAAAAVSVTGGISFIGLMAPHIAKSLVGPRHQIFMPIALLIGGWLLLLADTIGR 305 Query: 307 NIADPDGIPAGIMVSLIGVPYFAYLLLRK 335 NI +P+GIPAGI+V+LIG PYF YLLL+K Sbjct: 306 NIVEPNGIPAGIVVALIGAPYFMYLLLKK 334 >ref|NP_976777.1| iron compound ABC transporter, permease protein [Bacillus cereus ATCC 10987] gb|AAS39385.1| iron compound ABC transporter, permease protein [Bacillus cereus ATCC 10987] Length = 335 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/329 (57%), Positives = 242/329 (73%) Query: 7 VRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRIL 66 +RKQR T + GMGLG +SLS+DRLLP L G GTFKE+FVL+S+RLPRI+ Sbjct: 6 LRKQRLIILALLILTITTIVIGMGLGSASLSYDRLLPTLMGQGTFKEEFVLYSLRLPRIV 65 Query: 67 ITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPL 126 IT Q +TRNDLA+PGI+GINSGAGVAVA+FFLYFP+ GSF+Y LP+ Sbjct: 66 ITLLAGMALALSGAILQGLTRNDLAEPGILGINSGAGVAVAIFFLYFPIDVGSFLYLLPV 125 Query: 127 AAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIA 186 FIGA +TA LIY+FSYS++ GL P+R+ L G+GF+ ALSG+MIV+ISSA+R KVDFIA Sbjct: 126 VGFIGAFLTAVLIYVFSYSKSTGLQPVRLTLTGIGFAFALSGMMIVLISSADRMKVDFIA 185 Query: 187 KWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXX 246 KWIAGNIWG D+ F+ A+LPWL++ IPF +K+++LN+L+LNE A+GVG+ +E+ER Sbjct: 186 KWIAGNIWGDDWIFVLAMLPWLIVFIPFVFYKANRLNILALNEPVAIGVGIEIEKERRYL 245 Query: 247 XXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGR 306 TGGI+FIGLMAPHIAKSLVGPR+Q+F+P+ DT+G+ Sbjct: 246 LVAAVALAAAAVSVTGGISFIGLMAPHIAKSLVGPRHQIFMPIALLIGGWLLLLADTIGQ 305 Query: 307 NIADPDGIPAGIMVSLIGVPYFAYLLLRK 335 NI +P+G+PAGI+V+LIG PYF YLLL+K Sbjct: 306 NIVEPNGLPAGIVVALIGAPYFMYLLLKK 334 >ref|NP_347424.1| Ferrichrome transport permease [Clostridium acetobutylicum] pir||A96997 ferrichrome transport permease CAC0788 [imported] - Clostridium acetobutylicum gb|AAK78764.1| Ferrichrome transport permease [Clostridium acetobutylicum] Length = 336 Score = 315 bits (808), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 156/307 (50%), Positives = 220/307 (71%) Query: 29 MGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRILITXXXXXXXXXXXXXXQSVTRN 88 +G+G +LS++ L+P L G G+FK++FVLF +R PR+ IT Q++TRN Sbjct: 30 LGIGDYALSYNNLIPTLLGQGSFKDEFVLFDLRFPRMAITILSGMALALSGAVLQNITRN 89 Query: 89 DLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPLAAFIGAIMTATLIYLFSYSRTR 148 DLADPGIIGINSGAGVAV VFF+Y P+ + +F Y +P+ AFIGA++TA +IYL +Y + Sbjct: 90 DLADPGIIGINSGAGVAVTVFFMYMPIDSKTFSYLVPIIAFIGALITAVIIYLLAYKKNE 149 Query: 149 GLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIAKWIAGNIWGTDYPFIWALLPWL 208 G+ P+R+VL+GVG S+ALSG+MIVI+S A+R+KVDFI+KW+AGN+WG D+ F+ A+ P + Sbjct: 150 GVQPLRLVLLGVGLSMALSGLMIVIMSLADRSKVDFISKWLAGNVWGLDWAFVLAIFPCI 209 Query: 209 VLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXXXXXXXXXXXXXXXXTGGIAFIG 268 V+L+P+ L+KS+ LN++ L+ ++GVG+++E+ER TG I+FIG Sbjct: 210 VILVPYILYKSNTLNIIKLSRDVSIGVGMSIEKERFKLLMASVALSSFAVSVTGNISFIG 269 Query: 269 LMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGRNIADPDGIPAGIMVSLIGVPYF 328 LMAPHIAK+LVG RNQMFIP+ DT+G+++ IPAGI+VS+IG PYF Sbjct: 270 LMAPHIAKALVGHRNQMFIPIAILMGGWLLLLADTIGQHLLQSGNIPAGIVVSVIGAPYF 329 Query: 329 AYLLLRK 335 YLLL+K Sbjct: 330 IYLLLKK 336 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.144 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 394,255,559 Number of extensions: 13454369 Number of successful extensions: 47296 Number of sequences better than 1.0e-05: 635 Number of HSP's gapped: 45724 Number of HSP's successfully gapped: 667 Length of query: 335 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 209 Effective length of database: 415,135,104 Effective search space: 86763236736 Effective search space used: 86763236736 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)