BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0008.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832901.1| Transcriptional regulator, TetR family [Bacillu... 345 4e-94 ref|NP_843460.1| transcriptional regulator, TetR family [Bacillu... 345 4e-94 ref|NP_979530.1| transcriptional regulator, TetR family [Bacillu... 343 1e-93 ref|NP_654890.1| tetR, Bacterial regulatory proteins, tetR famil... 333 1e-90 ref|NP_488607.1| transcriptional regulator [Nostoc sp. PCC 7120]... 86 4e-16 >ref|NP_832901.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP10102.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 194 Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 164/194 (84%), Positives = 179/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE LL GVVD Sbjct: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEVLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D +LSQNQ VEDR+Q+FLK LSQGVQSREYKGSCPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDVLSQNQFLVEDRIQLFLKQLSQGVQSREYKGSCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TI+IDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQKKVSLLLKQGVENGEFRNTINIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HFF LLR Sbjct: 181 VITKTADHFFKLLR 194 >ref|NP_843460.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP24946.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 194 Score = 345 bits (884), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 163/194 (84%), Positives = 179/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE+LL GVVD Sbjct: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D +LSQNQ VE+R+Q+FLK LSQGVQSREYKG CPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDVLSQNQFLVENRIQLFLKQLSQGVQSREYKGGCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HFF LLR Sbjct: 181 VITKTADHFFKLLR 194 >ref|NP_979530.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS42138.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 194 Score = 343 bits (880), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 162/194 (83%), Positives = 179/194 (92%) Query: 1 MTKVKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVD 60 MTK+KLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE LL GVVD Sbjct: 1 MTKIKLMNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEVLLEGVVD 60 Query: 61 YWIETYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATH 120 YWIE Y+ A+D ++SQNQ VEDR+Q+FLK L+QGVQSREYKGSCPFITLYIQ+P QAT Sbjct: 61 YWIEMYQSAIDDVISQNQFLVEDRIQLFLKQLAQGVQSREYKGSCPFITLYIQSPTQATQ 120 Query: 121 IKEKIGLFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDAT 180 IKEKIGLFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDAT Sbjct: 121 IKEKIGLFFTGLQEKVSLLLKQGIENGEFRNTIHIDEVASLFITNLEGALFISETLKDAT 180 Query: 181 VITKTASHFFNLLR 194 VITKTA HFF LLR Sbjct: 181 VITKTADHFFKLLR 194 >ref|NP_654890.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] Length = 188 Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 157/188 (83%), Positives = 173/188 (92%) Query: 7 MNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVDYWIETY 66 MNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHF++KE+LL GVVDYWIE Y Sbjct: 1 MNQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFSNKEQLLEGVVDYWIEMY 60 Query: 67 ERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATHIKEKIG 126 + A+D +LSQNQ VE+R+Q+FLK LSQGVQSREYKG CPFITLYIQ+P QAT IKEKIG Sbjct: 61 QSAIDDVLSQNQFLVENRIQLFLKQLSQGVQSREYKGGCPFITLYIQSPTQATQIKEKIG 120 Query: 127 LFFTGLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDATVITKTA 186 LFFTGLQ K+SLLL+QG E GEFR+TIHIDEVA+LFITNLEGALF++ETLKDATVITKTA Sbjct: 121 LFFTGLQEKVSLLLKQGVENGEFRNTIHIDEVASLFITNLEGALFISETLKDATVITKTA 180 Query: 187 SHFFNLLR 194 HFF LLR Sbjct: 181 DHFFKLLR 188 >ref|NP_488607.1| transcriptional regulator [Nostoc sp. PCC 7120] pir||AG2376 transcription regulator alr4567 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB76266.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 201 Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 90/179 (50%), Gaps = 1/179 (0%) Query: 11 RVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVDYWIETYERAM 70 R+++ AA LF ++G+A +S+ +++RV+ + K +Y HF K+EL DY I + + Sbjct: 10 RILQQAAELFNQQGYAGSSISDIMRVTGLQKGGIYNHFQSKDELALQAFDYAIASISKHY 69 Query: 71 DQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATHIKEKIGLFFT 130 L + ++E RVQ + S ++ G CP + +++ ++E+ Sbjct: 70 RIALRSKRNAIE-RVQALIAVFSSFAENPPIPGGCPLLNTAVESDDAHPALRERTQQAMN 128 Query: 131 GLQMKISLLLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDATVITKTASHF 189 I ++Q G E+GE ++ +E+A + + LEGA+ +++ D + + +H Sbjct: 129 SWLNMIRRIIQTGIERGEIEPHVNAEEIATIIVATLEGAIMMSQLYDDTIYMQRAVNHL 187 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 240,355,749 Number of extensions: 8501119 Number of successful extensions: 23731 Number of sequences better than 1.0e-05: 67 Number of HSP's gapped: 23782 Number of HSP's successfully gapped: 67 Length of query: 194 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 75 Effective length of database: 434,140,797 Effective search space: 32560559775 Effective search space used: 32560559775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)