BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0010.p
         (114 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_958594.1| putative protein [Lactobacillus johnsonii proph...    91   1e-17

>ref|NP_958594.1| putative protein [Lactobacillus johnsonii prophage Lj965]
 ref|NP_964343.1| Lj965 prophage protein [Lactobacillus johnsonii prophage Lj965]
 gb|AAK27910.2| putative protein [Lactobacillus johnsonii prophage Lj965]
 gb|AAS08309.1| Lj965 prophage protein [Lactobacillus johnsonii prophage Lj965]
          Length = 118

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 2/115 (1%)

Query: 2   ISINGVTL-PSPTKYQVYIQDL-SKGERNVNGLLLLERIATKRKIDLSWKMLSPSQYATI 59
           + I+G  + P+P   QV IQD+ +K  R+  GLL  +R+ATKRKI L++  L+  + A I
Sbjct: 4   LKISGTVVNPAPQTMQVTIQDIDAKATRDAQGLLHRDRVATKRKITLAFGALTVPECAKI 63

Query: 60  LRLVSPVFFNVQYQDPEDATTRSGTFYAGDRSIGALNYTNGIVQYNELSFSIIER 114
           L  V   FF V Y DP+D   RSGTFY GDR+    ++ + +  +  LSF +IE+
Sbjct: 64  LGAVKSEFFIVDYLDPQDGNMRSGTFYVGDRTTPVYSFVDSVPVWKGLSFDLIEQ 118


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 168,786,461
Number of extensions: 6181125
Number of successful extensions: 12292
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12293
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 757,237,578
Length adjustment: 79
Effective length of query: 35
Effective length of database: 542,744,757
Effective search space: 18996066495
Effective search space used: 18996066495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)