BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0009.p (1010 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00061229.1| COG3953: SLT domain proteins [Clostridium the... 144 8e-33 ref|NP_562046.1| phage-related hypothetical protein [Clostridium... 112 7e-23 ref|NP_612842.1| putative tape-measure protein [Bacteriophage ph... 102 7e-20 ref|NP_471052.1| similar to minor capsid protein 1608 - Lactobac... 97 2e-18 ref|NP_654413.1| ERM, Ezrin/radixin/moesin family [Bacillus anth... 91 1e-16 >ref|ZP_00061229.1| COG3953: SLT domain proteins [Clostridium thermocellum ATCC 27405] Length = 760 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 4/201 (1%) Query: 58 FGKTAIGLASDLQEVQNVVDVTFGAMAQDINNWSTSLIDDFGLSELAGKKYASTMGAMLK 117 G A +A D E +N+ +V G+MA D WS GL+ +K +T AML Sbjct: 168 IGTAATKMAMDAVESENLFEVAMGSMAGDARKWSEETSKALGLNAFNVRKNVATYNAMLT 227 Query: 118 SSGMTGLQMEQMSKQLTELSADMASFYNLSNQEAFEKVFSGMTGETEPLKALGINMSVAN 177 S G+T + +MS+ LT+LS DMASFYNL +EAFEK+ SG++GE EPLKALGI ++ Sbjct: 228 SMGLTSQESLKMSEGLTQLSYDMASFYNLKPEEAFEKLKSGISGEAEPLKALGILVNDNT 287 Query: 178 MEAYAMSQGIDKAWNSMSQLEQTTLRASYLMKTTADAQGDFARTSNSWANQVKVMGEQWR 237 ++ YA S GI K +++ ++ R +M+ T +AQGD ART +S N+++VM EQ + Sbjct: 288 IKTYAYSHGIAKQGEQLTEAQKVQARYGAIMEATKNAQGDLARTMDSPTNKLRVMKEQTQ 347 Query: 238 IFQGTMGAGFINILTPVLRGL 258 +G F +L P+L L Sbjct: 348 ----QLGIQFGQLLIPILEKL 364 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 29/240 (12%) Query: 719 LNNVKNTLKKLWD---EVLKPIIEPFLKTMKELWEG---TISKIIDKVVNLVAKLIESAL 772 +N V N +K L E LK + + F+ ++W+ KII NLVA ++ + L Sbjct: 473 VNTVWNGVKALISGVIESLKAMFQAFITLANQIWKKYGDDFVKIITTAFNLVATIVNTTL 532 Query: 773 EIYNDFISPLINFVIDLLAPAFVKGFNIALNIVKTVIEGIGEFISGLLDALDGLI----D 828 + D I ++ I +G N+ + GI I +D + G I + Sbjct: 533 KAIQDVI-KIVTSAIKGDWKGVWEGIK---NLTSDLWNGIKNVIKSAIDLVKGTIKTEFE 588 Query: 829 FVTGVFTGNWSKAWEGVKKIFKGVFDSLWGIVKIPLNLIIDGINHVIDALNSI--SIDIP 886 F+ G+ G W G+K I V++ + ++ P+N + + + I+A+ ++ +P Sbjct: 589 FIKGIILG----IWNGIKGITSAVWNEIKSAIENPINAAKNAVGNAINAIKGFFSNLHLP 644 Query: 887 EIDVFGKKVGGGSIGINLNHIPP---------LARGGIISTPTIAQIGERGTEAVVPLEN 937 EI + K+ SI + PP A+GGI + P+I +GE GTEAV+P++ Sbjct: 645 EIKIPKIKLPHFSIEGEFSLKPPSVPYLGVDWYAKGGIFNRPSIIGVGEAGTEAVLPIDR 704 >ref|NP_562046.1| phage-related hypothetical protein [Clostridium perfringens] dbj|BAB80836.1| phage-related hypothetical protein [Clostridium perfringens str. 13] Length = 933 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 10/172 (5%) Query: 817 SGLLDALDGLIDFVTGVFTGNWSKAWEGVKKIFKGVFDSLWGIVKIPLNLIIDGINHVID 876 +G+ G+I F+ GVFTGNW A++G+ I K +F L GI+K P+N I GIN I Sbjct: 742 NGVKGVFTGIITFIKGVFTGNWRSAFQGLADIVKSIFGMLGGIIKAPINAAISGINMAIR 801 Query: 877 ALNSISIDIPEIDVFGKKVGGGSIGINLNHIPPLARGGIISTPTIAQIGE-RGTEAVVPL 935 +NS+S ++P + +GG G+NL IP LA GGI++ T+A +GE + EAV+PL Sbjct: 802 GINSLSFNVPS---WIPGIGGSHFGVNLPTIPALAEGGIVTKATMALVGEGKEHEAVIPL 858 Query: 936 ENTPFVDKLASALGTAVLTAMQMGQASSSTSDPYSQQETTLQIDGVTLARVL 987 +DKL S VL A + + + ++ Y E + IDG T+A+V+ Sbjct: 859 SK---LDKLVSRSVEKVLNAKEDSKDNKPNNNIY---EIIIPIDGKTIAKVV 904 >ref|NP_612842.1| putative tape-measure protein [Bacteriophage phi3626] gb|AAL96783.1| putative tape-measure protein [bacteriophage phi3626] Length = 961 Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 7/137 (5%) Query: 812 IGEFISGLLDALDGLIDFVTGVFTGNWSKAWEGVKKIFKGVFDSLWGIVKIPLNLIIDGI 871 +G G+ +G+I F GVFTGNW + ++G+ I +F ++ GI+K P+N I GI Sbjct: 769 VGSIWEGVKGVFNGVIRFFKGVFTGNWREVFQGLSDIVSSIFGAIGGIIKAPINAAISGI 828 Query: 872 NHVIDALNSISIDIPEIDVFGKKVGGGSIGINLNHIPPLARGGIISTPTIAQIGE-RGTE 930 N VI +N IS D+P + +GG GINL IP LA GGI++ T+A +GE + E Sbjct: 829 NWVIRQINKISFDVPS---WIPGIGGSHFGINLPTIPALAEGGIVTQATMALVGEGKEHE 885 Query: 931 AVVPLENTPFVDKLASA 947 AV+PL +DKL ++ Sbjct: 886 AVIPLSK---LDKLVTS 899 >ref|NP_471052.1| similar to minor capsid protein 1608 - Lactobacillus phage phi-gle [Listeria innocua] pir||AC1647 Lactobacillus phage phi-gle minor capsid protein 1608 homolog lin1716 [imported] - Listeria innocua (strain Clip11262) emb|CAC96947.1| lin1716 [Listeria innocua] Length = 1571 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 56/253 (22%) Query: 59 GKTAIGLASDLQEVQNVVDVTFGAMAQDINNWSTSLIDDFGLSELAGKKYASTMGAMLKS 118 GK ASD E N VDV F A+ + WS + +D+ GL++ A+T G M S Sbjct: 146 GKAMFNYASDTNESLNKVDVAFKGNAESVKRWSKTTLDNIGLAQGTALDLAATYGDMSTS 205 Query: 119 SGMTGLQMEQMSKQLTELSADMASFYNLSNQEAFEKVFSGMTGETEPLKALGINMSVANM 178 G++ + E+MS + +L+ ++ASF N+ A + TGETE LK+LGI M+ N+ Sbjct: 206 MGLSTQEAEKMSTSMVDLAGNLASFKNIDIDRANTALNGVFTGETEALKSLGIVMTQTNL 265 Query: 179 EAYAMSQGIDK--------------------------------------AWNSMSQLEQT 200 E +A+ G K A N + +++ Sbjct: 266 EQFALETGAGKVAKSSTEVTKQNIAREKAQKKLNEAIKEHGKNSLEAREAQNKLQEIQAK 325 Query: 201 T------------------LRASYLMKTTADAQGDFARTSNSWANQVKVMGEQWRIFQGT 242 T LR +Y+MK T +A GDF TS+ AN +V E + Sbjct: 326 TSEGAKVNLKDMKQDELVRLRYNYVMKQTTNAHGDFKNTSDQAANASRVFSESVKELASN 385 Query: 243 MGAGFINILTPVL 255 G + I+TP++ Sbjct: 386 AGQFLLPIITPLI 398 >ref|NP_654413.1| ERM, Ezrin/radixin/moesin family [Bacillus anthracis A2012] Length = 1311 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 29/228 (12%) Query: 729 LWDEVLKPIIEPFLK----TMKELWEGTISKIIDKVVNLVAKLIESALEIYNDFISPLIN 784 +++E KP I+ + T+K ++E + II VV +I+ ++N+ +SP+ + Sbjct: 983 IYNEYFKPTIDQIVSIIVSTLKPVFEQGFA-IIKDVVQDAFIIIQ---RVWNEILSPVFS 1038 Query: 785 FVIDL----LAPAFVKGFNIALNIVKTVIEGIGEFISGLLDA-LDGLIDFVTGVFTGNWS 839 + + L PAF F+ ++V GI + + +L L+G+IDF++G+F+GNW Sbjct: 1039 VITSIIKTVLLPAFKFVFSAIGSVVSDAFSGIKDMWNNVLKPILNGIIDFISGIFSGNWE 1098 Query: 840 KAWEGVKKIFKGVFDSLWGIVKIPLNLIIDGINHVIDALNSISIDIPEIDVFGKKVGGGS 899 KAW G+ KIF GVF+ + K P+N ++ +N +I+ +N SI++P+ F VGG Sbjct: 1099 KAWGGIVKIFSGVFEGIKSAAKAPINAVVSMLNGLIEGIN--SIEMPDWVPF---VGGSK 1153 Query: 900 IGINLNHIPPLARGGIISTPTIAQIGERGTE---------AVVPLENT 938 I IP LA GG + GE G E +V PL +T Sbjct: 1154 PSI--PRIPMLATGGHVLGDGSFIAGEAGPELFTKRGNRVSVTPLSST 1199 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,212,584,941 Number of extensions: 46959118 Number of successful extensions: 134398 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 134271 Number of HSP's successfully gapped: 43 Length of query: 1010 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 874 Effective length of database: 387,984,114 Effective search space: 339098115636 Effective search space used: 339098115636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)