BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0006.p
         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_695161.1| minor capsid protein [Bacteriophage phig1e] >gi...    69   3e-11
ref|NP_471716.1| similar to protein gp13 [Bacteriophage A118] [L...    55   4e-07

>ref|NP_695161.1| minor capsid protein [Bacteriophage phig1e]
 pir||T13213 major capsid protein gpP - Lactobacillus phage phi-gle
 emb|CAA66742.1| minor capsid protein [Bacteriophage phig1e]
 emb|CAA62101.1| capsid protein [Bacteriophage phig1e]
          Length = 178

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 10  HNNVFKIGIKG----RSSAAADMVTIKD-LENFAPAIDGNTEEWSPMDQGGWTRRAVTGK 64
           + NVF+I   G    + +  A  V +   +    PA +   +  +  D  G+T   VTGK
Sbjct: 8   YKNVFEIDTTGSQDPQDTTKATFVPLAAGISGVTPAANETDDNTAYYDGAGFTDTDVTGK 67

Query: 65  GLTISFSGKRNYGDPGNDYVAGLMIGTGQEVETKFEWTMPSGAKLTMDCVINLTTPAGGD 124
            +T++FSG R  GD   DYVA   +  G+ ++T   WT P G K+  +  I    P GG+
Sbjct: 68  RITLAFSGHRVIGDAAQDYVASKFLAIGESLKTLARWTDPDGNKIVSNVTITAIVPMGGN 127

Query: 125 STNIDGLEFELLSDGKP 141
           +       F L  +GKP
Sbjct: 128 ANAKQTFSFTLSFNGKP 144


>ref|NP_471716.1| similar to protein gp13 [Bacteriophage A118] [Listeria innocua]
 pir||AD1730 protein gp13 (Bacteriophage A118) homolog lin2385 [imported] -
           Listeria innocua (strain Clip11262)
 emb|CAC97612.1| lin2385 [Listeria innocua]
          Length = 228

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 14  FKIGIKGRSSAAADMVTIKDLENFAPAIDGNTEEWSPMDQGGWTRRAV-TGKGLTISFSG 72
            +I +K  S  + D V+IKDLE    +++ N E+++ +  G    RAV TG  + +   G
Sbjct: 9   LEISVK-DSGESGDGVSIKDLETLDISLNSNVEQYTTI--GEVFERAVKTGAAMELGLDG 65

Query: 73  KRNYGDPGNDYVAGLMIGTGQEVETKFEWTMPSGAKLTMDCVINLTTPAGGDSTNIDGLE 132
           K N  DPG + +       G E E       P+G+K  +   I +    GG + +I    
Sbjct: 66  KYNESDPGQNELRETWDKVGSEAEKTIVVKFPAGSKYEITGPIGINDFGGGGANDIGSFS 125

Query: 133 FELLSDGKPTFSPAP 147
               S+G P F+PAP
Sbjct: 126 ATQNSNGTPVFTPAP 140


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 268,416,282
Number of extensions: 12264263
Number of successful extensions: 15315
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 15314
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 757,237,578
Length adjustment: 111
Effective length of query: 41
Effective length of database: 455,861,589
Effective search space: 18690325149
Effective search space used: 18690325149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)