BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0029.p
         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_976331.1| conserved hypothetical protein [Bacillus cereus...    78   6e-14
ref|NP_829912.1| hypothetical protein [Bacillus cereus ATCC 1457...    77   1e-13
ref|NP_653958.1| hypothetical protein predicted by GeneMark [Bac...    75   4e-13
ref|NP_783869.1| unknown [Lactobacillus plantarum WCFS1] >gi|282...    73   2e-12
ref|ZP_00182274.1| hypothetical protein Exigu242201 [Exiguobacte...    72   5e-12

>ref|NP_976331.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS38939.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 74

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 50/73 (68%)

Query: 5  TKFMKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDK 64
          + FMK+I I +EYI L QFLKL+D + TGG  K  LQE  V VN E E+RRGRKLY  D 
Sbjct: 2  SDFMKRIKISTEYITLGQFLKLADVIDTGGAVKWFLQEYEVYVNQELENRRGRKLYANDI 61

Query: 65 VKVQDNGVFEVEG 77
          +++  +G F+V+ 
Sbjct: 62 IEIPGSGSFQVQS 74


>ref|NP_829912.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP07113.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 70

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 48/70 (68%)

Query: 8  MKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKV 67
          MK+I I +EYI L QFLKL+D + TGG  K  LQE  V VN E E+RRGRKLY  D +++
Sbjct: 1  MKRIKISTEYITLGQFLKLADVIDTGGAVKWFLQEYEVYVNNELENRRGRKLYANDVIEI 60

Query: 68 QDNGVFEVEG 77
            +G F+V+ 
Sbjct: 61 PGSGTFQVQA 70


>ref|NP_653958.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_842575.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP24061.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 70

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 48/70 (68%)

Query: 8  MKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKV 67
          MK+I I +EYI L QFLKL+D + TGG  K  LQE  V VN E E+RRGRKLY  D +++
Sbjct: 1  MKRIKISTEYITLGQFLKLADVIDTGGAVKWFLQEYEVYVNQELENRRGRKLYANDIIEI 60

Query: 68 QDNGVFEVEG 77
            +G F+V+ 
Sbjct: 61 PGSGSFQVQS 70


>ref|NP_783869.1| unknown [Lactobacillus plantarum WCFS1]
 emb|CAD62705.1| unknown [Lactobacillus plantarum WCFS1]
          Length = 77

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%)

Query: 9  KKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKVQ 68
          + I I + Y+ L Q LK +  + +GG AK  L+E  V VNGE +DRRGRKLYPGD ++V+
Sbjct: 3  QPIDIKTPYMTLGQLLKETAIIGSGGQAKWFLKETTVLVNGEPDDRRGRKLYPGDTIEVE 62

Query: 69 DNGVF 73
          DNG F
Sbjct: 63 DNGSF 67


>ref|ZP_00182274.1| hypothetical protein Exigu242201 [Exiguobacterium sp. 255-15]
          Length = 73

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 48/72 (66%)

Query: 8  MKKILIHSEYIKLDQFLKLSDCVSTGGMAKALLQEGYVQVNGEKEDRRGRKLYPGDKVKV 67
          M +I I +EY+ L QFLKLSD +S+GG AK  L E  + VNGE + RRGRKL  GD + V
Sbjct: 1  MNQIKISTEYVTLGQFLKLSDIISSGGQAKPFLAEVPILVNGEVDQRRGRKLRDGDVIDV 60

Query: 68 QDNGVFEVEGGG 79
          +D G F ++  G
Sbjct: 61 EDYGQFIIKNEG 72


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.138    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 124,337,401
Number of extensions: 4392063
Number of successful extensions: 8452
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 8451
Number of HSP's successfully gapped: 47
Length of query: 82
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 30
Effective length of database: 616,052,430
Effective search space: 18481572900
Effective search space used: 18481572900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)