BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0026.p
         (44 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244934.1| 50S ribosomal protein L34; ribosomal protein L3...    68   5e-11
ref|NP_816928.1| ribosomal protein L34 [Enterococcus faecalis V5...    67   1e-10
ref|NP_653955.1| hypothetical protein predicted by GeneMark [Bac...    65   4e-10
ref|NP_694418.1| 50S ribosomal protein L34 [Oceanobacillus iheye...    65   4e-10
ref|NP_472314.1| ribosomal protein L34 [Listeria innocua] >gi|16...    65   7e-10

>ref|NP_244934.1| 50S ribosomal protein L34; ribosomal protein L34 [Bacillus
          halodurans]
 sp|Q9RCA3|RL34_BACHD 50S ribosomal protein L34
 pir||B84158 ribosomal protein L34 rpmH [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAA82684.1| 86%-identity [Bacillus halodurans]
 dbj|BAB07785.1| 50S ribosomal protein L34 [Bacillus halodurans]
          Length = 45

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 38/43 (88%)

Query: 2  RPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          +PTF+PN  KRKKVHGFR RMSTKNGRKVLA RR KGRKVLSA
Sbjct: 3  KPTFQPNNRKRKKVHGFRARMSTKNGRKVLARRRKKGRKVLSA 45


>ref|NP_816928.1| ribosomal protein L34 [Enterococcus faecalis V583]
 gb|AAO82998.1| ribosomal protein L34 [Enterococcus faecalis V583]
          Length = 44

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 40/44 (90%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          M+ T++PN  KR+KVHGFRKRMSTKNGR+VLA+RR KGRKV+SA
Sbjct: 1  MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA 44


>ref|NP_653955.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_835143.1| LSU ribosomal protein L34P [Bacillus cereus ATCC 14579]
 ref|NP_847883.1| ribosomal protein L34 [Bacillus anthracis str. Ames]
 ref|NP_981931.1| ribosomal protein L34 [Bacillus cereus ATCC 10987]
 gb|AAN14423.1| 50S ribosomal protein L34 [Bacillus weihenstephanensis]
 gb|AAP12344.1| LSU ribosomal protein L34P [Bacillus cereus ATCC 14579]
 gb|AAP29369.1| ribosomal protein L34 [Bacillus anthracis str. Ames]
 gb|AAS44539.1| ribosomal protein L34 [Bacillus cereus ATCC 10987]
          Length = 44

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 37/44 (84%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          M+ T++PN  KR KVHGFR RMST NGRKVLAARR KGRKVLSA
Sbjct: 1  MKRTYQPNKRKRSKVHGFRSRMSTANGRKVLAARRRKGRKVLSA 44


>ref|NP_694418.1| 50S ribosomal protein L34 [Oceanobacillus iheyensis HTE831]
 dbj|BAC15452.1| 50S ribosomal protein L34 [Oceanobacillus iheyensis HTE831]
          Length = 44

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          M+ TF+PN  KRKKVHGFR RMSTKNGR VLA RR KGRKVLSA
Sbjct: 1  MKRTFQPNNRKRKKVHGFRARMSTKNGRNVLARRRRKGRKVLSA 44


>ref|NP_472314.1| ribosomal protein L34 [Listeria innocua]
 ref|NP_466378.1| ribosomal protein L34 [Listeria monocytogenes EGD-e]
 sp|Q926Q3|RL34_LISMO 50S ribosomal protein L34
 pir||AE1805 ribosomal protein L34 [imported] - Listeria innocua (strain
          Clip11262)
 pir||AG1431 ribosomal protein L34 [imported] - Listeria monocytogenes
          (strain EGD-e)
 emb|CAD01069.1| ribosomal protein L34 [Listeria monocytogenes]
 emb|CAC98213.1| ribosomal protein L34 [Listeria innocua]
          Length = 44

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 39/44 (88%)

Query: 1  MRPTFKPNVSKRKKVHGFRKRMSTKNGRKVLAARRLKGRKVLSA 44
          M+ T++P+  KRKKVHGFR RMSTKNGR+VLA+RR KGRKVLSA
Sbjct: 1  MKRTYQPSKRKRKKVHGFRTRMSTKNGRRVLASRRRKGRKVLSA 44


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 57,837,568
Number of extensions: 1307299
Number of successful extensions: 3139
Number of sequences better than 1.0e-05: 215
Number of HSP's gapped: 3140
Number of HSP's successfully gapped: 215
Length of query: 44
Length of database: 757,237,578
Length adjustment: 17
Effective length of query: 27
Effective length of database: 711,080,895
Effective search space: 19199184165
Effective search space used: 19199184165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)