BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0025.p
         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_835142.1| Ribonuclease P protein component [Bacillus cere...    79   3e-14
ref|NP_653954.1| Ribonuclease_P, Ribonuclease P [Bacillus anthra...    78   8e-14
ref|NP_981930.1| ribonuclease P protein component [Bacillus cere...    77   9e-14
ref|NP_244933.1| ribonuclease P [Bacillus halodurans] >gi|978979...    74   1e-12
gb|AAN14422.1| RNase P [Bacillus weihenstephanensis]                   72   4e-12

>ref|NP_835142.1| Ribonuclease P protein component [Bacillus cereus ATCC 14579]
 gb|AAP12343.1| Ribonuclease P protein component [Bacillus cereus ATCC 14579]
          Length = 119

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 56/79 (70%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VY  +++E   FR+G+SVSKK+GNAVVRNR++R+V++ +   + EIA G D V I RK  
Sbjct: 34  VYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMVRQAITELKDEIASGKDFVIIARKPC 93

Query: 61  LSKDYAELEKSVLHVLRKA 79
               Y E++KS++HV +++
Sbjct: 94  AEMTYEEVKKSLIHVFKRS 112


>ref|NP_653954.1| Ribonuclease_P, Ribonuclease P [Bacillus anthracis A2012]
 ref|NP_847882.1| ribonuclease P protein component [Bacillus anthracis str. Ames]
 gb|AAP29368.1| ribonuclease P protein component [Bacillus anthracis str. Ames]
          Length = 119

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 2/87 (2%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VY  +++E   FR+G+SVSKK+GNAVVRNR++R++++ +   + EI  G D V I RK  
Sbjct: 30  VYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKDFVIIARKPC 89

Query: 61  LSKDYAELEKSVLHVLRKA--KLLKAS 85
               Y EL+KS++HV +++  K +K+S
Sbjct: 90  AEMTYEELKKSLIHVFKRSGMKRIKSS 116


>ref|NP_981930.1| ribonuclease P protein component [Bacillus cereus ATCC 10987]
 gb|AAS44538.1| ribonuclease P protein component [Bacillus cereus ATCC 10987]
          Length = 115

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 55/79 (69%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VY  +++E   FR+G+SVSKK+GNAVVRNR++R++++ +   + EI  G D V I RK  
Sbjct: 30  VYQLDKEEQPNFRIGLSVSKKIGNAVVRNRIKRMIRQSITELKDEIDSGKDFVIIARKPC 89

Query: 61  LSKDYAELEKSVLHVLRKA 79
               Y EL+KS++HV +++
Sbjct: 90  AEMTYEELKKSLIHVFKRS 108


>ref|NP_244933.1| ribonuclease P [Bacillus halodurans]
 sp|Q9RCA4|RNPA_BACHD Ribonuclease P protein component (RNaseP protein) (RNase P protein)
           (Protein C5)
 pir||A84158 ribonuclease P rnpA [imported] - Bacillus halodurans (strain C-125)
 dbj|BAA82683.1| 56%-identity [Bacillus halodurans]
 dbj|BAB07784.1| ribonuclease P [Bacillus halodurans]
          Length = 119

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 56/84 (66%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           +Y   ++  + FR+G+SVSKK+GNAV RNR++RL++   + HE  I+G  D V I RK A
Sbjct: 30  IYVLPKEGQDFFRVGLSVSKKIGNAVTRNRVKRLIRTFFQEHEQAISGERDYVIIARKPA 89

Query: 61  LSKDYAELEKSVLHVLRKAKLLKA 84
               Y +++ S+ HV +KAK+++ 
Sbjct: 90  ADMTYEQVKGSLWHVCKKAKIIQP 113


>gb|AAN14422.1| RNase P [Bacillus weihenstephanensis]
          Length = 105

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 52/76 (68%)

Query: 1   VYWFNRKEVERFRLGVSVSKKVGNAVVRNRMRRLVKEIVRHHEPEIAGGLDMVFIVRKGA 60
           VY  ++++   FR+G+SVSKK+GNAVVRNR++R++++ +   + EI  G D V I RK  
Sbjct: 30  VYKLDKEKQPHFRIGLSVSKKIGNAVVRNRIKRMIRQSIIELKDEIDSGKDFVIIARKPC 89

Query: 61  LSKDYAELEKSVLHVL 76
               Y EL+KS++HV 
Sbjct: 90  AEMTYEELKKSLIHVF 105


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.137    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 109,956,418
Number of extensions: 3450531
Number of successful extensions: 9558
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 9591
Number of HSP's successfully gapped: 46
Length of query: 87
Length of database: 757,237,578
Length adjustment: 56
Effective length of query: 31
Effective length of database: 605,192,034
Effective search space: 18760953054
Effective search space used: 18760953054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)