BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0014.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244922.1| BH4054~unknown conserved protein in B. subtilis... 207 9e-53 ref|NP_391975.1| yyaC [Bacillus subtilis] >gi|586851|sp|P37521|Y... 202 4e-51 ref|NP_835133.1| hypothetical protein [Bacillus cereus ATCC 1457... 195 4e-49 ref|NP_981921.1| conserved hypothetical protein [Bacillus cereus... 194 9e-49 ref|NP_653945.1| hypothetical protein predicted by GeneMark [Bac... 193 2e-48 >ref|NP_244922.1| BH4054~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||F84156 hypothetical protein BH4054 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07773.1| BH4054~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 216 Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 101/179 (56%), Positives = 129/179 (72%), Gaps = 1/179 (0%) Query: 12 EPSCLKISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDSLGPLVGTALAR 71 +P ++ DP + +LL H S + ++IVC+GTDRSTGD+LGP+VGTAL + Sbjct: 10 KPPPFRVHMDDPQASDQLVEQLLTHVS-SYRHRELVIVCIGTDRSTGDALGPIVGTALTK 68 Query: 72 FHSPLFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSASVGCIQVVDGPL 131 FH+YGTL +PVHAVNLEE L LI +KH PFII IDACLG +SVG + + GP+ Sbjct: 69 ECLNCFHVYGTLADPVHAVNLEEKLKLIEKKHRRPFIIAIDACLGKLSSVGKVSLAAGPV 128 Query: 132 RPGAGVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIASSLYSALKQW 190 +PGA VNK+LP VGD+HLTGIVN+GG MEYFVLQNTRL VM+L+D I+SSL +Q+ Sbjct: 129 QPGAAVNKKLPAVGDVHLTGIVNIGGMMEYFVLQNTRLHTVMQLADTISSSLVKLDQQF 187 >ref|NP_391975.1| yyaC [Bacillus subtilis] sp|P37521|YYAC_BACSU Hypothetical protein yyaC pir||I40446 hypothetical protein yyaC - Bacillus subtilis emb|CAA44410.1| unnamed protein product [Bacillus subtilis] dbj|BAA05225.1| unknown [Bacillus subtilis] emb|CAB16132.1| yyaC [Bacillus subtilis subsp. subtilis str. 168] Length = 205 Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 94/166 (56%), Positives = 119/166 (71%), Gaps = 1/166 (0%) Query: 18 ISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDSLGPLVGTALARFHSPLF 77 +SH D I +L R A PI++VC+GTDRSTGDSLGPLVG L + F Sbjct: 18 VSHTDAAAAKQI-QTILSSSLRKAAGKPIVVVCIGTDRSTGDSLGPLVGMKLKQMQLTRF 76 Query: 78 HLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSASVGCIQVVDGPLRPGAGV 137 H+YGTL +PVHAVN+++ + IH+ H NPF+I +DACLG SVG Q+ DGPL+PGAGV Sbjct: 77 HVYGTLSDPVHAVNMKDKINDIHKLHKNPFVIAVDACLGRVKSVGSFQIGDGPLKPGAGV 136 Query: 138 NKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIASSL 183 K LP VGD+H+ GIVNV GFMEYFVLQNTRL+LVM +++++A L Sbjct: 137 QKDLPEVGDLHINGIVNVSGFMEYFVLQNTRLNLVMNMANVLAEGL 182 >ref|NP_835133.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP12334.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 198 Score = 195 bits (496), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 100/198 (50%), Positives = 133/198 (67%), Gaps = 9/198 (4%) Query: 1 MNSSSKAVPLPEPSCLKISHADPNIYSAITHRLLFHFS-RTNADTPIIIVCVGTDRSTGD 59 MN S +P E + H D I++ LL H +TN P+I+VC+GTDRSTGD Sbjct: 1 MNIGSFRLPFFEKETQNVMHQDLEASEIISNFLLTHIPIKTN--IPLILVCIGTDRSTGD 58 Query: 60 SLGPLVGTALARFHSPLFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSA 119 +LGPLVGT L + ++GTLDEPVHA+NLEE + I +++ FII +DACLG S Sbjct: 59 ALGPLVGTKLEQIDIQNLQVFGTLDEPVHALNLEEKIQNIQKEYPTAFIIAVDACLGKSQ 118 Query: 120 SVGCIQVVDGPLRPGAGVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDII 179 ++G I GP +PGA +NK+LP VGD+H+ GIVN+ GFME+FVLQNTRLSLVM+++D+I Sbjct: 119 NIGSITTGKGPSKPGAAMNKKLPAVGDLHIHGIVNLNGFMEFFVLQNTRLSLVMKMADVI 178 Query: 180 ASSL------YSALKQWN 191 A S+ SALK+ N Sbjct: 179 AKSIKETDQKLSALKKAN 196 >ref|NP_981921.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS44529.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 198 Score = 194 bits (494), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 101/197 (51%), Positives = 130/197 (65%), Gaps = 7/197 (3%) Query: 1 MNSSSKAVPLPEPSCLKISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDS 60 MN S +P E + H D I++ LL H N PII+VC+GTDRSTGD+ Sbjct: 1 MNIGSFRLPFFEKETQNVMHQDLEASETISNFLLSHIPIKN-HIPIILVCIGTDRSTGDA 59 Query: 61 LGPLVGTALARFHSPLFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSAS 120 LGPLVGT L + F ++GTLDEPVHA+NLEE + I + + FII +DACLG S S Sbjct: 60 LGPLVGTKLEQVGITNFQVFGTLDEPVHALNLEEKIQNIQKDNPASFIIAVDACLGKSQS 119 Query: 121 VGCIQVVDGPLRPGAGVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIA 180 +G I GP +PGA +NK+LP VGD+H+ GIVN+ GFME+FVLQNTRLSLVM+++D+IA Sbjct: 120 IGSITTGMGPSKPGAAMNKKLPAVGDLHIHGIVNLNGFMEFFVLQNTRLSLVMKMADVIA 179 Query: 181 SSL------YSALKQWN 191 S+ S LK+ N Sbjct: 180 QSIKETDQKLSVLKKAN 196 >ref|NP_653945.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847873.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP29359.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 198 Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 100/197 (50%), Positives = 129/197 (65%), Gaps = 7/197 (3%) Query: 1 MNSSSKAVPLPEPSCLKISHADPNIYSAITHRLLFHFSRTNADTPIIIVCVGTDRSTGDS 60 MN S +P E + H D I++ LL H PII+VC+GTDRSTGD+ Sbjct: 1 MNIGSFRLPFFEKETQNVMHQDLEASETISNFLLSHIP-IKTHIPIILVCIGTDRSTGDA 59 Query: 61 LGPLVGTALARFHSPLFHLYGTLDEPVHAVNLEETLTLIHEKHNNPFIIGIDACLGHSAS 120 LGPLVGT L + F ++GTLDEPVHA+NLEE + I + + FII +DACLG S S Sbjct: 60 LGPLVGTKLEQVGIKNFQVFGTLDEPVHALNLEEKIQNIQKDNPASFIIAVDACLGKSQS 119 Query: 121 VGCIQVVDGPLRPGAGVNKQLPPVGDIHLTGIVNVGGFMEYFVLQNTRLSLVMRLSDIIA 180 +G I GP +PGA +NK+LP VGD+H+ GIVN+ GFME+FVLQNTRLSLVM+++D+IA Sbjct: 120 IGSITTGMGPSKPGAAMNKKLPAVGDLHIHGIVNLNGFMEFFVLQNTRLSLVMKMADVIA 179 Query: 181 SSLYS------ALKQWN 191 S+ ALK+ N Sbjct: 180 QSIKETDQKICALKKAN 196 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 303,732,087 Number of extensions: 12319542 Number of successful extensions: 24221 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 24216 Number of HSP's successfully gapped: 18 Length of query: 202 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 82 Effective length of database: 431,425,698 Effective search space: 35376907236 Effective search space used: 35376907236 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)