BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0010.p
         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_693212.1| hypothetical protein OB2291 [Oceanobacillus ihe...    61   9e-09
ref|NP_389008.1| yjzC [Bacillus subtilis] >gi|7475128|pir||F6985...    60   2e-08
ref|NP_243759.1| BH2893~unknown conserved protein in bacilli [Ba...    56   3e-07
ref|NP_655075.1| hypothetical protein predicted by GeneMark [Bac...    55   5e-07
ref|NP_977607.1| conserved hypothetical protein [Bacillus cereus...    54   9e-07

>ref|NP_693212.1| hypothetical protein OB2291 [Oceanobacillus iheyensis HTE831]
 dbj|BAC14247.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 66

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 40/56 (71%), Gaps = 3/56 (5%)

Query: 1  MGEQTEYEKGDKAPNPGIYTEVGEARSFHTQIQHPKRIEMKKGDTFPETSNKNRKW 56
          MGE++E+  G+KAPN G+Y E+GE  S    +  P+ +E++ GD+FP+ +NK+R W
Sbjct: 1  MGERSEFRAGEKAPNNGVYMEIGETGS---NVNDPQIVELQAGDSFPDNTNKDRVW 53


>ref|NP_389008.1| yjzC [Bacillus subtilis]
 pir||F69854 hypothetical protein yjzC - Bacillus subtilis
 emb|CAB12967.1| yjzC [Bacillus subtilis subsp. subtilis str. 168]
          Length = 59

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 1  MGEQTEYEKGDKAPNPGIYTEVGEARSFHTQIQHPKRIEMKKGDTFPETSNKNRKW 56
          MG+Q ++  G KAPN G+Y E+GE  S    +++P+++ +  G+ FPETSN NR W
Sbjct: 1  MGQQHQFRPGQKAPNNGVYVEIGETGSM---VKNPQKVHLSAGEMFPETSNHNRLW 53


>ref|NP_243759.1| BH2893~unknown conserved protein in bacilli [Bacillus halodurans]
 pir||E84011 hypothetical protein BH2893 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB06612.1| BH2893 [Bacillus halodurans]
          Length = 59

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 1  MGEQTEYEKGDKAPNPGIYTEVGEARSFHTQIQHPKRIEMKKGDTFPETSNKNRKW 56
          MG+  ++  G KAPN G+Y E+GE     T    P+ ++++ GD FPET+NK+RKW
Sbjct: 1  MGQNRQFIPGQKAPNNGVYVEIGETGDMVT---DPREVKLEVGDRFPETTNKDRKW 53


>ref|NP_655075.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_843654.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP25140.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 59

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 1  MGEQTEYEKGDKAPNPGIYTEVGEARSFHTQIQHPKRIEMKKGDTFPETSNKNRKW 56
          MG+   +  G KAPN GIY E+GE  S    ++ P+ +++  GD FP+ +N NR+W
Sbjct: 1  MGQNRRFRSGQKAPNDGIYVEIGETGSM---VKDPQMVKLTAGDKFPDNTNHNRQW 53


>ref|NP_977607.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS40215.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 128

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 1   MGEQTEYEKGDKAPNPGIYTEVGEARSFHTQIQHPKRIEMKKGDTFPETSNKNRKW 56
           MG+   +  G KAPN GIY E+GE  S    ++ P+ +++  G+ FP+ +N NR+W
Sbjct: 70  MGQNRRFRSGQKAPNDGIYVEIGETGS---MVKDPQMVKLTAGEKFPDNTNHNRQW 122


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.308    0.127    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 108,265,466
Number of extensions: 3529258
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4914
Number of HSP's successfully gapped: 6
Length of query: 65
Length of database: 757,237,578
Length adjustment: 36
Effective length of query: 29
Effective length of database: 659,494,014
Effective search space: 19125326406
Effective search space used: 19125326406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 120 (50.8 bits)