BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0006.p (665 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_149262.1| DNA mismatch repair protein, MUTS fragment [Clo... 367 e-100 ref|NP_691160.1| DNA mismatch repair protein [Oceanobacillus ihe... 359 1e-97 ref|NP_833214.1| DNA mismatch repair protein mutS [Bacillus cere... 357 7e-97 ref|NP_657399.1| MUTSac, ATPase domain of DNA mismatch repair MU... 354 5e-96 ref|NP_979797.1| MutS family protein, putative [Bacillus cereus ... 353 9e-96 >ref|NP_149262.1| DNA mismatch repair protein, MUTS fragment [Clostridium acetobutylicum] gb|AAK76844.1| DNA mismatch repair protein, MUTS fragment [Clostridium acetobutylicum] Length = 629 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/654 (31%), Positives = 342/654 (52%), Gaps = 49/654 (7%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 M+ + L Y E+K+ + Y S G+ + L P + V+R LDET+E + LL+ Sbjct: 1 MDNTTLEKLHYHELKEIVKGYCASGLGKALIDKLEPSINIDVVNRRLDETSEGRTLLDAS 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 +P + ++ L+ + G + +D + FL+ +L+ +M+ KE AP ++SY+ Sbjct: 61 YHIPFDGIFNVKPLIEKIEKGASLAPEDLSMMENFLRGSRKLKLFMKGKEGYAPTLSSYS 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVMAK--HQGI 178 ++ +LS + EEI I + +ASK L+++RKR+ + +D++++++E + ++ Sbjct: 121 LNITDLSYIEEEINTSISGNRVASNASKELKKIRKRIDICEDQIKKRLEKFLENPVNKEY 180 Query: 179 LQENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXX 238 +QE VS R G+Y +P+K + +V+G +++ S G TVFVEP + Sbjct: 181 IQEFFVSQRNGKYTVPIKTAFKNKVQGKIVETSLKGSTVFVEPDVVARYASELSELRIEE 240 Query: 239 XXXXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRM 298 IL+ LT +L ++ +++NIE+ YD I+AK KY+ + LN GY+++ Sbjct: 241 TLEEYKILATLTEMLYEKIKEIKINIEVIAEYDMIWAKVKYSSDIKGIKPKLNGHGYIKI 300 Query: 299 NGGRHPKLEGMIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEEG 358 G +P ++ +P+ E G Y+SLI+TGPN VQSG + EEG Sbjct: 301 VKGGYPLIKNGVPLDFEIGKEYRSLIITGPNAGGKTVVLKTLGLLTLAVQSGFHISAEEG 360 Query: 359 SDFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGEG 418 ++ VF + IGD QS+ +LSTFS+ ++++ ++R++ + LLL DE+ +GT+P EG Sbjct: 361 TEIAVFNKIFVDIGDNQSVENALSTFSSHVKNLAYIVRESNKSTLLLFDEIGSGTEPNEG 420 Query: 419 FALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGEA 478 AL+IAILEE+ KG + TTH+ E+K F+ F+NA MEF +DTL PLYRL IG+ Sbjct: 421 AALAIAILEEVYHKGCITVATTHYGEIKNFSEQHPDFENAAMEFRRDTLDPLYRLNIGKT 480 Query: 479 GESYALQIAEKLGIPETVIRRSQQLVEQQR---EMDGDRSHWNSLNRTGHHRPGERAKQE 535 G+S AL I++K+GI + VI R++ +E + E+ + N N H G + Sbjct: 481 GDSNALYISKKMGISDNVIERARSYMENKNYNYELIRNSKIINEKNIEKHKDEGYK---- 536 Query: 536 MQRTERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKDFEIGDAVYVNPLDRMGIVYETRD 595 F +GD V IVY+ RD Sbjct: 537 -------------------------------------FNVGDKVLWIDKKESAIVYKERD 559 Query: 596 AVGMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRKKRKLMR 649 A V ++ ++ + NHKRLK + +LYPE YD + IF + KKRKL R Sbjct: 560 AYNNVTILFNEEFISVNHKRLKLEIKASKLYPEGYDLNQIFSN---YKKRKLER 610 >ref|NP_691160.1| DNA mismatch repair protein [Oceanobacillus iheyensis HTE831] dbj|BAC12195.1| DNA mismatch repair protein [Oceanobacillus iheyensis HTE831] Length = 634 Score = 359 bits (922), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 197/646 (30%), Positives = 345/646 (53%), Gaps = 40/646 (6%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 MN + LQY E+KQ + Y VS G++ + L P + + V L+ET EA+++++ Sbjct: 1 MNNATFDKLQYNELKQIINSYCVSGLGKQLLDKLEPSSNINVVKNRLNETTEARKIIDAK 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 +P + ++ ++ + + D ++VS FL+ C +++ +M KE AP +ASYA Sbjct: 61 GHIPFLGVSNIDSIIQNIEKDIILDPSDLISVSDFLRGCRKIKSFMMEKEFFAPVLASYA 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVMAK--HQGI 178 S+ E V EEI+ I+ +++ AS+ L+R+R ++ +A++R++ ++ + ++ Sbjct: 121 NSMTEFQHVEEEIDFSIKGNSVNSAASRELKRIRNKIDIAEERIKDRLNKFLNNDTNKKY 180 Query: 179 LQENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXX 238 +QE +S + RY IP+K Y QV G ++D S+ G TVF+EP + Sbjct: 181 IQEAFISKKDDRYTIPIKASYKNQVSGTIIDVSSKGSTVFMEPSTVTKLGGELASLRAEE 240 Query: 239 XXXXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRM 298 +L+ L+G++ + +++N+E+ YD +FAKAK+++ + LND GY+++ Sbjct: 241 AIEEYQVLATLSGMILENIYEIKINMELISQYDMVFAKAKFSKEIDGSEPKLNDYGYIKL 300 Query: 299 NGGRHPKLEG-MIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEE 357 +HP L G +P++ E G Y+SLI+TGPN SG + + Sbjct: 301 VDCKHPLLVGEAVPLNFEIGQDYRSLIITGPNAGGKTIVLKTIGLLTLATMSGFHIAASK 360 Query: 358 GSDFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGE 417 ++ VF ++ + IGD QS+ +LSTFS+ M+++ ++R + LLL DE+ +GT+P E Sbjct: 361 ETEIAVFENIYADIGDNQSIENALSTFSSHMKNLSEIMRLSNNNTLLLFDEIGSGTEPNE 420 Query: 418 GFALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGE 477 G AL+I+ILEE G + TTH+ E+K F+ F NA M FD DTL+PLY+L IG+ Sbjct: 421 GSALAISILEEFYHMGCITVATTHYGEIKRFSEIHDDFMNAAMRFDNDTLEPLYQLVIGK 480 Query: 478 AGESYALQIAEKLGIPETVIRRSQQLVEQQREMDGDRSHWNSLNRTGHHRPGERAKQEMQ 537 +GES AL I+ K+ +PE +++R+ Q + Q + +R + N + +P + ++ +Q Sbjct: 481 SGESNALWISRKMNVPENILQRASQYM-QNKGYQLERVNENKI-----RKPKIKKEKSVQ 534 Query: 538 RTERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKDFEIGDAVYVNPLDRMGIVYETRDAV 597 K ++ GD V + D +GIVY+ D+ Sbjct: 535 Y-------------------------------KYEYSKGDRVKLLEHDDIGIVYKEMDSS 563 Query: 598 GMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRK 643 V V + + + + KR+ +S +ELYP YD + +F +T+K Sbjct: 564 YNVVVYYKGEFIDVHVKRISLDISAKELYPAGYDLETLFVDHKTKK 609 >ref|NP_833214.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 14579] gb|AAP10415.1| DNA mismatch repair protein mutS [Bacillus cereus ATCC 14579] Length = 633 Score = 357 bits (915), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 202/647 (31%), Positives = 344/647 (53%), Gaps = 43/647 (6%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 MNT + LQY E+K + Y VS G++ V+ L P T + V L+ET EA+ +L+ Sbjct: 1 MNTMTFEKLQYNELKDIVKSYCVSGLGKELVNKLEPSTSIKVVRNRLNETTEARAILDAE 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 VP + + + L G + ++ ++VS FL+ C +++K+M KE AP +ASYA Sbjct: 61 GHVPFFGISNIASTIQKLEKGMILDPEELVSVSDFLRGCRKIKKFMLDKEFFAPVLASYA 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVM--AKHQGI 178 S+ E + EEI I+ +ID ASK L+R+R + +++ ++ + + ++ Sbjct: 121 NSMTEYKSIEEEINFSIKGNSIDVAASKELKRIRNNIDSVDGKIKERLTKFLNSSANKKF 180 Query: 179 LQENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXX 238 +QE +S + RY IP+K Y QV G++++ S G TVF+EP+ + Sbjct: 181 IQEFFISKKDDRYTIPIKSSYKNQVAGSIIEASAKGSTVFIEPHTVTKLNAELAGLKAEE 240 Query: 239 XXXXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRM 298 IL+ L+G++ + +++N+E+ YD +FAKAK+++++ LND GY+ + Sbjct: 241 AVEEYQILATLSGMVLENIYNIKINMELISQYDMVFAKAKFSKSIDGIEPKLNDHGYIHL 300 Query: 299 NGGRHPKLEG-MIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEE 357 +HP L G ++P+ + G Y+SLI+TGPN SGL + ++ Sbjct: 301 VNCKHPLLTGQVVPLHFKIGQEYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDK 360 Query: 358 GSDFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGE 417 G++ +F +V IGD QS+ +LSTFS+ M+++ ++R + LLL DE+ +GT+P E Sbjct: 361 GTEIAIFENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNE 420 Query: 418 GFALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGE 477 G AL+I+ILEE G + +TH+ E+K F+ F NA M+F+ +TL+PLY+L IG+ Sbjct: 421 GAALAISILEEFYLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGK 480 Query: 478 AGESYALQIAEKLGIPETVIRRSQQLVEQQREMDGDRSH-WNSLNRTGHHRPGERAKQEM 536 +GES AL IA K+ + E V++R+++ + G++ + +N + +P K Sbjct: 481 SGESNALWIANKMSVKEHVLKRAKEYM-------GNKEYALEKVNESKIRKP----KFVQ 529 Query: 537 QRTERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKDFEIGDAVYVNPLDRMGIVYETRDA 596 ++ E H +++IGD V + D GI+Y+ +D Sbjct: 530 EKRESH----------------------------YEYKIGDRVNLLDHDDFGIIYKEKDN 561 Query: 597 VGMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRK 643 V V + + N KR+ ++ +ELYPE YD + +F + RK Sbjct: 562 FYNVVVYYNGEFVEVNVKRITLEVAAKELYPEGYDLNTLFVDYKERK 608 >ref|NP_657399.1| MUTSac, ATPase domain of DNA mismatch repair MUTS family [Bacillus anthracis A2012] ref|NP_845823.1| MutS family protein, putative [Bacillus anthracis str. Ames] gb|AAP27309.1| MutS family protein, putative [Bacillus anthracis str. Ames] Length = 633 Score = 354 bits (908), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 200/647 (30%), Positives = 343/647 (53%), Gaps = 43/647 (6%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 MNT + LQY E+K + Y VS G++ ++ L P T + V L+ET EA+ +L+ Sbjct: 1 MNTMTFEKLQYNELKDIVKFYCVSGLGKELINKLEPSTSIKVVRNRLNETTEARAILDAE 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 VP + + + L G + ++ ++VS FL+ C +++K+M KE AP +ASYA Sbjct: 61 GHVPFFGISNIASTIQKLEKGMILDPEELVSVSDFLRGCRKIKKFMLDKEFFAPVLASYA 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVM--AKHQGI 178 S+ E + EEI I+ +ID ASK L+R+R + +++ ++ + + ++ Sbjct: 121 NSMTEYKSIEEEINFSIKGNSIDSAASKELKRIRNNIDSVDGKIKERLTKFLNSSANKKY 180 Query: 179 LQENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXX 238 +QE +S + RY IP+K Y QV G++++ S G TVF+EP+ + Sbjct: 181 IQEFFISKKDDRYTIPIKSSYKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEE 240 Query: 239 XXXXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRM 298 IL+ L+G++ + +++N+E+ YD +FAKAK+++++ LND G++ + Sbjct: 241 AMEEYQILATLSGMVVENIYHIKINMELISQYDMVFAKAKFSKSIDGIEPKLNDHGHIHL 300 Query: 299 NGGRHPKLEG-MIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEE 357 +HP L G ++P++ E G Y+SLI+TGPN SGL + ++ Sbjct: 301 VNCKHPLLSGKVVPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDK 360 Query: 358 GSDFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGE 417 ++ +F +V IGD QS+ +LSTFS+ M+++ ++R + LLL DE+ +GT+P E Sbjct: 361 ETEIAIFENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNE 420 Query: 418 GFALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGE 477 G AL+I+ILEE G + +TH+ E+K F+ F NA M+F+ +TL+PLY+L IG+ Sbjct: 421 GAALAISILEEFYLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGK 480 Query: 478 AGESYALQIAEKLGIPETVIRRSQQLVEQQREMDGDRSH-WNSLNRTGHHRPGERAKQEM 536 +GES AL IA K+ + E V++R++ + G++ + +N + +P K Sbjct: 481 SGESNALWIANKMNVRERVLKRAKAYM-------GNKEYTLEKVNESKIRKP----KFLQ 529 Query: 537 QRTERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKDFEIGDAVYVNPLDRMGIVYETRDA 596 ++ E H +++IGD V + D GI+Y+ +D Sbjct: 530 EKRENH----------------------------YEYKIGDRVNLLDHDDFGIIYKEKDN 561 Query: 597 VGMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRK 643 V V + + N KR+ ++ +ELYPE YD + +F + RK Sbjct: 562 FYNVVVYYNGEFIEVNVKRITLEVAAKELYPEGYDLNTLFVDYKERK 608 >ref|NP_979797.1| MutS family protein, putative [Bacillus cereus ATCC 10987] gb|AAS42405.1| MutS family protein, putative [Bacillus cereus ATCC 10987] Length = 633 Score = 353 bits (905), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 200/647 (30%), Positives = 340/647 (52%), Gaps = 43/647 (6%) Query: 1 MNTDSQITLQYEEMKQDLGRYAVSYEGRKAVSGLAPMTYLPAVHRALDETAEAKELLEKG 60 MNT + LQY E+K + Y VS G++ ++ L P + V L+ET EA+ +L+ Sbjct: 1 MNTMTFEKLQYNELKDIVKSYCVSGLGKELINKLEPSASIKVVRNRLNETTEARAILDAE 60 Query: 61 ASVPIPSLEGMEWLMSLLGTGYLYSEKDFMAVSVFLQSCSQLRKYMQAKEQSAPRIASYA 120 VP + + + L G + ++ ++VS FL+ C +++K+M KE AP +ASYA Sbjct: 61 GHVPFFGISNIASTIQKLEKGMILDPEELVSVSDFLRGCRKIKKFMLDKEFFAPVLASYA 120 Query: 121 ASLVELSGVREEIERCIRLGTIDDHASKGLERVRKRLTVAKDRLQRKIEAVM--AKHQGI 178 S+ E + EEI I+ +ID ASK L+R+R + +++ ++ + + ++ Sbjct: 121 NSMTEFKSIEEEINFSIKGNSIDSAASKELKRIRNNIDSVDGKIKERLTKFLNSSANKKY 180 Query: 179 LQENLVSMRGGRYVIPVKREYHKQVKGAVLDQSTSGQTVFVEPYEIXXXXXXXXXXXXXX 238 +QE +S + RY IP+K Y QV G++++ S G TVF+EP+ + Sbjct: 181 IQEFFISKKDDRYTIPIKSSYKNQVAGSIVEASAKGSTVFIEPHTVTKLNVELASLKAEE 240 Query: 239 XXXXXXILSMLTGLLEQEQAALRLNIEITGNYDFIFAKAKYARTMGARSVALNDRGYLRM 298 IL+ L+G++ + +++N+E+ YD +FAKAK+++++ LND GY+ + Sbjct: 241 AMEEYQILATLSGMVVENIYHIKINMELISQYDMVFAKAKFSKSIDGIEPKLNDHGYVHL 300 Query: 299 NGGRHPKLEG-MIPISLEFGNGYKSLIVTGPNXXXXXXXXXXXXXXXXMVQSGLLVPVEE 357 +HP L G ++P++ E G Y+SLI+TGPN SGL + ++ Sbjct: 301 VNCKHPLLSGKVVPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDK 360 Query: 358 GSDFTVFTDVISVIGDGQSLTQSLSTFSAQMRSIEGMLRDAGRGVLLLIDELAAGTDPGE 417 ++ +F +V IGD QS+ +LSTFS+ M+++ ++R + LLL DE+ +GT+P E Sbjct: 361 ETEIAIFENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNE 420 Query: 418 GFALSIAILEELNRKGANIIVTTHFNELKVFAASTSGFQNARMEFDKDTLQPLYRLTIGE 477 G AL+I+ILEE G + +TH+ E+K F+ F NA M+F+ +TL+PLY+L IG+ Sbjct: 421 GAALAISILEEFYLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGK 480 Query: 478 AGESYALQIAEKLGIPETVIRRSQQLVEQQREMDGDRSH-WNSLNRTGHHRPGERAKQEM 536 +GES AL IA K+ + E V++R ++ + G++ + +N + +P K Sbjct: 481 SGESNALWIANKMNVREHVLKRVKEYM-------GNKEYALEKVNESKIRKP----KFVQ 529 Query: 537 QRTERHPTEAAGPVKXXXXXXXXXXXXGDGKAPKKDFEIGDAVYVNPLDRMGIVYETRDA 596 ++ E H +++IGD V + D GI+Y+ D Sbjct: 530 EKRENH----------------------------YEYKIGDRVNLLDYDDFGIIYKEIDN 561 Query: 597 VGMVGVMVQKQKMRFNHKRLKPYLSKEELYPEEYDFDIIFESKETRK 643 V V + N KR+ ++ +ELYPE YD + +F + RK Sbjct: 562 FYNVVVYYNGDFVEVNVKRINLEVAAKELYPEGYDLNTLFVDYKERK 608 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 862,740,443 Number of extensions: 33821921 Number of successful extensions: 92577 Number of sequences better than 1.0e-05: 575 Number of HSP's gapped: 91917 Number of HSP's successfully gapped: 577 Length of query: 665 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 533 Effective length of database: 398,844,510 Effective search space: 212584123830 Effective search space used: 212584123830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)