BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0005.p (578 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977049.1| oligopeptide ABC transporter, oligopeptide-bind... 405 e-111 ref|NP_654602.1| SBP_bac_5, Bacterial extracellular solute-bindi... 402 e-110 ref|NP_693532.1| oligopeptide ABC transporter oligopeptide-bindi... 376 e-103 ref|NP_244503.1| oligopeptide ABC transporter (oligopeptide-bind... 350 5e-95 ref|NP_645690.1| ORFID:MW0873~hypothetical protein, similar to o... 341 3e-92 >ref|NP_977049.1| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus cereus ATCC 10987] gb|AAS39657.1| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus cereus ATCC 10987] Length = 593 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 222/569 (39%), Positives = 337/569 (59%), Gaps = 14/569 (2%) Query: 12 RYCGLVLAMALMLSACSGI--GSERL-SYGVLSNK-EAEVPAAG-----GTVTYGY--SS 60 + + A L+LSAC G GS++ + V +NK A V G G++TYG +S Sbjct: 8 KVLSTLAASTLLLSACGGADSGSKKANTKKVETNKFSAAVKNDGKEIKDGSLTYGLVSNS 67 Query: 61 PFQGLFEPAFYEGEDDYQVLEFITEAMFRV-KDDLTTVPGIASWQESDDHTVFTFRIRPG 119 PF G+ YE D ++++F E + K+ T G A++ S+D T +I+ Sbjct: 68 PFAGVLSRVLYEVAPDSEIMDFFDEQLLATDKNWEITNDGAATYTISEDKKTITIKIKDN 127 Query: 120 VRWHNGDELTVEDWKFALETIASPEYTGSRY-YSVEMISGAEAFHKGKAKEISGIKVIDP 178 V+WH+G+ +T ED +++ I + +YTG RY ++MI G E +H GKA +ISGIKV+DP Sbjct: 128 VKWHDGNPVTAEDLEYSYLIIGNSKYTGIRYDTQMQMIEGMEEYHAGKADKISGIKVVDP 187 Query: 179 YTLRITMNSVRVNALDNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPIGIGPFEVTNIQPG 238 T+ IT V + +W YP K+ + ++ + +SD +R++PIG GPF+V I PG Sbjct: 188 KTISITYKEVNPSLKTGIWTYPTPKKYLGDVPIEKLAESDKIRQNPIGFGPFKVKKIVPG 247 Query: 239 QLVEMKAFEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATAPRDAYASLKQLDQVN 298 + VE + F+DY+ GKP L VT KV + + L + ID+A D Y ++ +L Sbjct: 248 ESVEYERFDDYWGGKPKLKNVTLKVVNPSIVSASLKKGDIDIAAITADQYPNVSKLKNTQ 307 Query: 299 ILQSPELSYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYALDREGIINQYSYGLG 358 ++ +L+Y YIGFKFG D + VMDN KF D RLRQAM YA+DRE + + +GL Sbjct: 308 LIGKTDLAYTYIGFKFGHMDKAKNEAVMDNDKFKDVRLRQAMAYAIDREKLGEKVYHGLR 367 Query: 359 SLIETPVPSSSWAKIPDSEINTYPYSPERAKALLNEAGYVDRDGDGLREDPKGAPFVIHY 418 +P+P S K ++ + Y ++AK LL+EAGY D++GDG REDPKG F I++ Sbjct: 368 VPANSPIP-PSMPKYHNNNVGAYNLDVDKAKKLLDEAGYKDKNGDGFREDPKGNEFKINF 426 Query: 419 DAMTGSTTAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEAVENDDPSVELFNGVWGL 478 A GS T+E + +Q+W+D+GL V L G+L + N E ++ DDP V++F+G W Sbjct: 427 LASNGSETSEPLAKFYIQSWKDIGLKVELVDGRLHEFNAMREMIKKDDPKVDIFSGAWNT 486 Query: 479 ASDPDPSGLWREIDLWNYPRFSSKRNEELIREGVGIKSYDKEHRKQVYYEWQKLVNEEVP 538 SDPD SGLW + +NY R+ + N +L+ G+ K+ D+++RK+VY +WQKL+++E P Sbjct: 487 GSDPDLSGLWGKNAGFNYQRWVNDENTKLLDAGLSEKATDEKYRKEVYDKWQKLIHDEAP 546 Query: 539 MIFFAERINITAVNKRLQNVKVNSMSNII 567 MI ++T VNKR++N VN+ N I Sbjct: 547 MIPIHYTFDLTGVNKRVKNYDVNTEVNQI 575 >ref|NP_654602.1| SBP_bac_5, Bacterial extracellular solute-binding proteins, family 5 [Bacillus anthracis A2012] ref|NP_843186.1| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus anthracis str. Ames] gb|AAP24672.1| oligopeptide ABC transporter, oligopeptide-binding protein [Bacillus anthracis str. Ames] Length = 593 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 221/569 (38%), Positives = 336/569 (59%), Gaps = 14/569 (2%) Query: 12 RYCGLVLAMALMLSACSGI--GSERL-SYGVLSNK-EAEVPAAG-----GTVTYGY--SS 60 + + A L+LSAC G GS++ + V +NK A V G G++TYG +S Sbjct: 8 KVLSTLAASTLLLSACGGADSGSKKTNTKKVETNKFSAAVKNDGKEIKDGSLTYGLVSNS 67 Query: 61 PFQGLFEPAFYEGEDDYQVLEFITEAMFRV-KDDLTTVPGIASWQESDDHTVFTFRIRPG 119 PF G+ YE D ++++F E + K+ T G A++ S+D T +I+ Sbjct: 68 PFAGVLSRVLYEVAPDSEIMDFFDEGLLASDKNWEITNDGAATYTISEDKKTITIKIKDN 127 Query: 120 VRWHNGDELTVEDWKFALETIASPEYTGSRY-YSVEMISGAEAFHKGKAKEISGIKVIDP 178 V+WH+G+ +T ED +++ I + +YTG RY ++MI G E +H GKA +ISGIKV+DP Sbjct: 128 VKWHDGNPVTAEDLEYSYLIIGNSKYTGIRYDTQMQMIEGMEEYHAGKADKISGIKVVDP 187 Query: 179 YTLRITMNSVRVNALDNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPIGIGPFEVTNIQPG 238 T+ IT V + +W YP K+ + ++ + +SD +R++PIG GPF+V I PG Sbjct: 188 KTISITYKEVNPSLKTGIWTYPTPKKYLGDVPIEKLAESDKIRQNPIGFGPFKVKKIVPG 247 Query: 239 QLVEMKAFEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATAPRDAYASLKQLDQVN 298 + VE + F+DY+ GKP L VT KV + + L + ID+A+ D Y ++ +L Sbjct: 248 ESVEYERFDDYWAGKPKLKNVTLKVVNPSIVSASLKKGDIDIASITADQYPNVSKLKNTQ 307 Query: 299 ILQSPELSYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYALDREGIINQYSYGLG 358 ++ L+Y YIGFKFG D + VMDN KF D RLRQAM YA+DRE + + +GL Sbjct: 308 LVGKTALAYTYIGFKFGHMDKAKNEAVMDNDKFKDVRLRQAMAYAIDREKLGEKVYHGLR 367 Query: 359 SLIETPVPSSSWAKIPDSEINTYPYSPERAKALLNEAGYVDRDGDGLREDPKGAPFVIHY 418 +P+P S K ++ Y ++AK LL+EAGY D++GDG REDPKG F I++ Sbjct: 368 VPANSPIP-PSMPKYHNNNAGAYNLDVDKAKKLLDEAGYKDKNGDGFREDPKGNEFKINF 426 Query: 419 DAMTGSTTAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEAVENDDPSVELFNGVWGL 478 A GS T+E + +Q+W+D+GL V L G+L + N E ++ DDP V++F+G W Sbjct: 427 LASNGSETSEPLAKFYIQSWKDIGLKVELVDGRLHEFNAMREMIKKDDPKVDIFSGAWNT 486 Query: 479 ASDPDPSGLWREIDLWNYPRFSSKRNEELIREGVGIKSYDKEHRKQVYYEWQKLVNEEVP 538 SDPD SGLW + +NY R+ + N +L+ G+ K+ D+++RK+VY +WQKL+++E P Sbjct: 487 GSDPDLSGLWGKNAGFNYQRWVNDENTKLLDAGLSEKATDEKYRKEVYDKWQKLIHDEAP 546 Query: 539 MIFFAERINITAVNKRLQNVKVNSMSNII 567 MI ++T VNKR+++ VN+ N I Sbjct: 547 MIPIHYTFDLTGVNKRVKDFDVNAEVNQI 575 >ref|NP_693532.1| oligopeptide ABC transporter oligopeptide-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC14567.1| oligopeptide ABC transporter oligopeptide-binding protein [Oceanobacillus iheyensis HTE831] Length = 613 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/522 (38%), Positives = 311/522 (59%), Gaps = 17/522 (3%) Query: 51 GGTVTYGY--SSPFQGLFEPAFYEGEDDYQVLEFITEAMFRVKDDLT-TVPGIASWQESD 107 GGT+ +G + F+G FY G D +++ E + ++ T G A W+ SD Sbjct: 76 GGTLNFGLVTDTVFEGTLNWNFYSGAPDAEIIGLFDEPLLSTDNNFNYTQDGAAEWEVSD 135 Query: 108 DHTVFTFRIRPGVRWHNGDELTVEDWKFALETIASPEYTGSRYYS-VEMISGAEAFHKGK 166 D+ FTF IR V WH+G+ +T EDW ++ E I P+YTG RY S + + G EA+H G+ Sbjct: 136 DNKTFTFTIRDNVNWHDGEPVTAEDWAYSFEVIGHPDYTGVRYDSTMTNVEGMEAYHNGE 195 Query: 167 AKEISGIKVIDPYTLRITMNSVRVNAL-DNLWPYPMNKRVYSGIAVKDMPDSDPVRKHPI 225 A+ ISGI+V+D TL+IT + + +WPY M K ++ I V +M +SD VR++PI Sbjct: 196 AESISGIEVVDEKTLKITFIEANPSLIASGIWPYAMPKHIFEEIPVAEMAESDAVRQNPI 255 Query: 226 GIGPFEVTNIQPGQLVEMKAFEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATA-P 284 G+GPF+V +I PG+ V A EDY+QG P LDG+T KV + +V L+ +D+ + P Sbjct: 256 GMGPFKVDSIVPGESVTFTANEDYWQGTPKLDGLTLKVVAPETVVQALETGEVDLVDSFP 315 Query: 285 RDAYASLKQ-LDQVNILQSPELSYEYIGFKFGSWDHESQKIVMD-NPKFADKRLRQAMYY 342 D Y + + + V L +L+Y YIGFK G WD ++ ++V + + K AD LR+AM++ Sbjct: 316 TDQYPDVAETMTNVEFLGQTDLAYTYIGFKLGKWDGDAGEVVPNPDAKMADVNLRKAMWH 375 Query: 343 ALDREGIINQYSYGL----GSLIETPVPSSSWAKIPDSEINTYPYSPERAKALLNEAGYV 398 A+D + + Q+ GL +LI +P+ + D I Y P+ A +L+EAGY Sbjct: 376 AVDNDAVGKQFYNGLRWNANTLI---IPA--YPDYHDPSIEAPTYDPDLANQILDEAGYE 430 Query: 399 DRDGDGLREDPKGAPFVIHYDAMTGSTTAEARTRAILQNWRDVGLDVRLNGGQLKDLNTF 458 D GDG+RE+P G VI++ +M+G TAE +Q+W VGL V+L G+L++ NTF Sbjct: 431 DVTGDGIRENPDGEELVINFASMSGGDTAEPIANYYIQSWEAVGLKVQLLDGRLQEFNTF 490 Query: 459 YEAVENDDPSVELFNGVWGLASDPDPSGLWREIDLWNYPRFSSKRNEELIREGVGIKSYD 518 Y+ VE DDP ++++ G WG SD DPSGL+ +NY R++S+ N+EL+ EG S D Sbjct: 491 YDRVEADDPDIDIYQGAWGTGSDVDPSGLYGRNAQFNYTRYASEENDELLAEGASEASLD 550 Query: 519 KEHRKQVYYEWQKLVNEEVPMIFFAERINITAVNKRLQNVKV 560 HR++VY +WQ+L+ +E+P+ R + VN R+ + + Sbjct: 551 IAHRQEVYKDWQQLMVDEIPVFPTLYRAVLVPVNNRVTDYSI 592 >ref|NP_244503.1| oligopeptide ABC transporter (oligopeptide-binding protein) [Bacillus halodurans] pir||D84104 oligopeptide ABC transporter (oligopeptide-binding protein) BH3636 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07355.1| oligopeptide ABC transporter (oligopeptide-binding protein) [Bacillus halodurans] Length = 610 Score = 350 bits (898), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 199/536 (37%), Positives = 308/536 (57%), Gaps = 14/536 (2%) Query: 51 GGTVTYGY--SSPFQGLFEPAFYEGEDDYQVLEFITEAMFRVKDD-LTTVPGIASWQESD 107 GG++T+G SPF+G+ FY+ D QVL++ +A+ ++ + T G A+++ S+ Sbjct: 75 GGSITFGLVLDSPFEGILNWNFYQSNPDAQVLQWFDDALIDWDENYVMTQDGAATYEISE 134 Query: 108 DHTVFTFRIRPGVRWHNGDELTVEDWKFALETIASPEYTGSRYY-SVEMISGAEAFHKGK 166 D FTF IR V WH+G+ +T EDW FA E I P Y G R+ ++ + G E +H G+ Sbjct: 135 DGRTFTFTIRDNVNWHDGEPVTAEDWAFAHEVIGHPNYDGIRFDDTLRNVEGIEEYHNGE 194 Query: 167 AKEISGIKVIDPYTLRITMNSVRVNALDN-LWPYPMNKRVYSGIAVKDMPDSDPVRKHPI 225 A ISGI+V+D TL+IT + + +W YP+ K ++ + ++D+ S VR++PI Sbjct: 195 ADHISGIEVVDEKTLKITYKKATPSLMTGGVWYYPLAKHIFGDMDIEDISSSPEVRQNPI 254 Query: 226 GIGPFEVTNIQPGQLVEMKAFEDYYQGKPLLDGVTYKVFDDKDIVNLLDENVIDMATA-P 284 G GPF+V N+ PG+ V EDY++G+P LD V KV ++ L +D+ + P Sbjct: 255 GFGPFKVENVVPGESVVYSKNEDYWRGEPNLDEVVLKVVSPNVVMQSLRSGEVDLVHSFP 314 Query: 285 RDAYASLKQLDQVNILQSPELSYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYAL 344 D + ++ L + +Y YIGFK G+W+ K D K AD LR+AM++A+ Sbjct: 315 ADQFPDNADTSNLDWLGVVDRAYTYIGFKLGTWEDGEVKTDPD-AKMADVNLRRAMWHAI 373 Query: 345 DREGIINQYSYGLGSLIETPVPSSSWAKIPDSEINTYP---YSPERAKALLNEAGYVDRD 401 D + + ++ +GL T +P S P+ +T P Y PE AK LL+EAGY D D Sbjct: 374 DNDAVGERFYHGLRWAGTTLIPPSH----PEFHDDTNPGRAYDPELAKQLLDEAGYEDVD 429 Query: 402 GDGLREDPKGAPFVIHYDAMTGSTTAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEA 461 GDG RED +G VI++ +M+G AE + +Q W VGL V+L G+L + N FY+ Sbjct: 430 GDGFREDLEGNELVINFASMSGGDIAEPLAQYYIQAWEQVGLKVQLLDGRLHEFNAFYDR 489 Query: 462 VENDDPSVELFNGVWGLASDPDPSGLWREIDLWNYPRFSSKRNEELIREGVGIKSYDKEH 521 VE DDP ++++ G WG+ D DPSGL+ +NY R+SS+ N+ L+ E + +++D E Sbjct: 490 VEEDDPDIDIYQGAWGVGIDVDPSGLYGRRAPFNYTRWSSEENDRLLEEALSEEAFDVEK 549 Query: 522 RKQVYYEWQKLVNEEVPMIFFAERINITAVNKRLQNVKVNSMSNIIDPQTWWIQEE 577 R+++Y EWQ+L+ +EVP+I R I VNKR+ N + + + QEE Sbjct: 550 RQEIYKEWQQLMVDEVPVIPTLYRSEIVPVNKRIVNWAIGDGHGVYRHELGITQEE 605 >ref|NP_645690.1| ORFID:MW0873~hypothetical protein, similar to oligopeptide ABC transporter oligopeptide-binding protein [Staphylococcus aureus subsp. aureus MW2] dbj|BAB94738.1| MW0873 [Staphylococcus aureus subsp. aureus MW2] Length = 571 Score = 341 bits (874), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 198/565 (35%), Positives = 309/565 (54%), Gaps = 30/565 (5%) Query: 12 RYCGLVLAMALMLSACSGIGSERLSYGVLSNKEAEVPA-AGGTVTYGYSSPFQGLFEPAF 70 +Y ++L + L+LSAC S GV + E GGT+ ++P G++ Sbjct: 6 KYISILLIVVLVLSACGK--SSNKDEGVKDATKTEASKHKGGTLNVALTAPPSGVYSSLL 63 Query: 71 YEGEDDYQVLEFITEAMFRVKDDLTTVPGIASWQESDDHTVFTFRIRPGVRWHNGDELTV 130 D V + E + + + IASW++ + F+I+ G++WH+G+EL + Sbjct: 64 NSTHADAVVEGYFNENLLTIDKKIRPKSYIASWKDIEPAKKIEFKIKKGIKWHDGNELKI 123 Query: 131 EDWKFALETIASPEYTGSRYYSVEMISGAEAFHKGKAKEISGIKVIDPYTLRITMNSVRV 190 +DW +++E +A+ +Y G+ Y SVE I GA+ +H+GKA ISG+K ID YT+++T + + Sbjct: 124 DDWIYSIEVLANKDYEGAYYPSVENIQGAKDYHEGKADHISGLKKIDDYTMQVTFDKKQE 183 Query: 191 NALDNLWPYPM-NKRVYSGIAVKDMPDSDPVRKHPIGIGPFEVTNIQPGQLVEMKAFEDY 249 N L P+ +K+ S + +KD+ SD +RK+PIGIGP++V I PG+ V++ F+DY Sbjct: 184 NYLTGFITGPLLSKKYLSDVPIKDLAKSDKIRKYPIGIGPYKVKKIVPGEAVQLVKFDDY 243 Query: 250 YQGKPLLDGVTYKVFDDKDIVNLLDENVID--------MATAPRDAYASLKQLDQVNILQ 301 +QGKP LD + KV D I+ +++ ID MA + + A LK +L Sbjct: 244 WQGKPALDKINLKVIDQAQIIKAMEKGDIDVTNDATGAMAKDAKSSNAGLK------VLS 297 Query: 302 SPELSYEYIGFKFGSWDHESQKIVMDNPKFADKRLRQAMYYALDREGIINQYSYGLGSLI 361 +P L Y IGF +D ++ K PK+ DK LR+AM YA+DRE I + G S I Sbjct: 298 APSLDYGLIGFVSHDYDKKANKTGKVRPKYEDKELRKAMLYAIDREKWIKAFFNGYASEI 357 Query: 362 ETPVPSSSWAKIPDSEINTYPYSPERAKALLNEAGYVDRDGDGLREDPKGAPFVIHYDAM 421 + VPS W E+N Y Y PE+AK +L++ GY DRDGDG REDPKG F I++ Sbjct: 358 NSFVPSMHWIAADPKELNDYKYDPEKAKKILDKLGYKDRDGDGFREDPKGNKFEINFKHY 417 Query: 422 TGST-TAEARTRAILQNWRDVGLDVRLNGGQLKDLNTFYEAVENDDPSVELFNGVWGLAS 480 +GS T E RT AI W VGL + +L + + E + N +E++ W + Sbjct: 418 SGSNPTFEPRTAAIKDFWEKVGLKTNV---KLVEFGKYNEDLANASKDMEVYFRSWAGGT 474 Query: 481 DPDPSGLWREIDLWN-----YPRFSSKRNEELIREGVGIKSYDKEHRKQVYYEWQKLVNE 535 DPDPS L+ N P+ ++ L + VGI D++ RK +Y +WQK +N+ Sbjct: 475 DPDPSDLYHTDRPQNEMRTVLPKSDQYLDDALDFDKVGI---DEKKRKDIYVKWQKYMND 531 Query: 536 EVPMIFFAERINITAVNKRLQNVKV 560 E+P + + +IT VN +++N+ + Sbjct: 532 ELPGLPMFQGKSITIVNDKVRNLDI 556 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 937,211,743 Number of extensions: 42104913 Number of successful extensions: 98994 Number of sequences better than 1.0e-05: 850 Number of HSP's gapped: 97789 Number of HSP's successfully gapped: 854 Length of query: 578 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 447 Effective length of database: 401,559,609 Effective search space: 179497145223 Effective search space used: 179497145223 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)