BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0003.p
         (92 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_950502.1| conserved hypothetical protein [Onion yellows p...   131   5e-30
gb|EAD07602.1| unknown [environmental sequence]                       119   2e-26
gb|EAE62681.1| unknown [environmental sequence]                       109   2e-23
gb|EAI42199.1| unknown [environmental sequence]                       104   5e-22
ref|NP_737498.1| hypothetical protein [Corynebacterium efficiens...    99   2e-20

>ref|NP_950502.1| conserved hypothetical protein [Onion yellows phytoplasma]
 ref|NP_950744.1| conserved hypothetical protein [Onion yellows phytoplasma]
 dbj|BAD04335.1| conserved hypothetical protein [Onion yellows phytoplasma]
 dbj|BAD04577.1| conserved hypothetical protein [Onion yellows phytoplasma]
          Length = 213

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 72/91 (79%), Gaps = 2/91 (2%)

Query: 1   LSRVTCIFTGIKISPDLSLRQRPSRYAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQLR 60
           LSRVT IFTG  ISP L LRQRP+RYA RAG+NLPDKEFRYLRTVIVTAAVYW F S LR
Sbjct: 125 LSRVTGIFTGNLISPRLLLRQRPNRYAFRAGRNLPDKEFRYLRTVIVTAAVYWDFNSMLR 184

Query: 61  SCLLTAPLNLPAPGRRQPVYFALRLRTDLCF 91
              LT+P NLPAPGR QP+Y  LR   DLCF
Sbjct: 185 C--LTSPFNLPAPGRHQPLYITLRFSRDLCF 213


>gb|EAD07602.1| unknown [environmental sequence]
          Length = 109

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 69/92 (75%)

Query: 1   LSRVTCIFTGIKISPDLSLRQRPSRYAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQLR 60
           L RV  IFT I IS  ++LRQRP RYAIRAG+NLPDKEFRYLRTVIVTAAVY GF  +L 
Sbjct: 18  LPRVDGIFTAISISLRITLRQRPDRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFSLELW 77

Query: 61  SCLLTAPLNLPAPGRRQPVYFALRLRTDLCFC 92
           S  LT PLNLPAPGRR  +Y  LR    LCFC
Sbjct: 78  SEDLTPPLNLPAPGRRHTLYIILRFSRVLCFC 109


>gb|EAE62681.1| unknown [environmental sequence]
          Length = 74

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 59/74 (79%)

Query: 19 LRQRPSRYAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQLRSCLLTAPLNLPAPGRRQP 78
          +RQRP RYAIRAG+NLPDKEFRYLRTVIVTAAVY GF  +LRS  LT PLNLPAPGRR  
Sbjct: 1  MRQRPDRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFSLELRSEDLTPPLNLPAPGRRHT 60

Query: 79 VYFALRLRTDLCFC 92
          +Y  LR    LCFC
Sbjct: 61 LYIILRFSRVLCFC 74


>gb|EAI42199.1| unknown [environmental sequence]
          Length = 74

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 59/74 (79%)

Query: 19 LRQRPSRYAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQLRSCLLTAPLNLPAPGRRQP 78
          +RQ  +RY IRAG+NLPDKEFRYLRTVIVTAAVY GF  +LRS  LT+P NLPAPGR Q 
Sbjct: 1  MRQCSNRYTIRAGRNLPDKEFRYLRTVIVTAAVYRGFILKLRSEELTSPFNLPAPGRCQS 60

Query: 79 VYFALRLRTDLCFC 92
          +YF LR   DLCFC
Sbjct: 61 LYFILRFSRDLCFC 74


>ref|NP_737498.1| hypothetical protein [Corynebacterium efficiens YS-314]
 ref|NP_739413.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 dbj|BAC19613.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 66

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 19 LRQRPSRYAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQLRSCL-LTAPLNLPAPGRRQ 77
          +RQ+ SRYAIRAG+NLPDKEFRYLR VIVT AVYWG  SQLR    LT PLNLPAPGRRQ
Sbjct: 1  MRQQGSRYAIRAGRNLPDKEFRYLRMVIVTTAVYWGLNSQLRRLTQLTGPLNLPAPGRRQ 60

Query: 78 PVYFAL 83
           VY  L
Sbjct: 61 SVYINL 66


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.330    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 130,303,443
Number of extensions: 4380520
Number of successful extensions: 21290
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 21286
Number of HSP's successfully gapped: 103
Length of query: 92
Length of database: 757,237,578
Length adjustment: 60
Effective length of query: 32
Effective length of database: 594,331,638
Effective search space: 19018612416
Effective search space used: 19018612416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 120 (50.8 bits)