BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0005.p
         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF15891.2| NosA [Nostoc sp. GSV224]                                57   2e-07
ref|ZP_00110897.1| COG3319: Thioesterase domains of type I polyk...    56   2e-07
ref|ZP_00110269.1| COG1020: Non-ribosomal peptide synthetase mod...    52   5e-06
ref|ZP_00110266.1| COG1020: Non-ribosomal peptide synthetase mod...    52   5e-06
ref|ZP_00124542.1| COG1020: Non-ribosomal peptide synthetase mod...    52   6e-06

>gb|AAF15891.2| NosA [Nostoc sp. GSV224]
          Length = 4379

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 6/98 (6%)

Query: 20   PAGKPDRTEVVIKDANQ------LQMTRSHKEIVQILARVLDLQELSIFANFEDLGWNSL 73
            P GK DR  +   D  Q      +  T   + I  I  + L+++++ I+ NF +LG +SL
Sbjct: 4238 PNGKVDRRALPAPDLQQELSNYVMPNTEVERIIAGIWQKTLEVEKVGIYNNFFELGGHSL 4297

Query: 74   LAVRLHKELDAVFPGLFAISDVFSYPTVHDMAAFLERK 111
            L VR++++L   F    +I D+F+YPT+H ++ +L  K
Sbjct: 4298 LLVRINQQLQEKFGLEVSIVDMFNYPTIHRLSQYLSTK 4335


>ref|ZP_00110897.1| COG3319: Thioesterase domains of type I polyketide synthases or
            non-ribosomal peptide synthetases [Nostoc punctiforme]
          Length = 4389

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 20   PAGKPDRTEVVIKDANQ------LQMTRSHKEIVQILARVLDLQELSIFANFEDLGWNSL 73
            P GK DR  +   D  Q      +  T   K I  I    L+++++ I+ NF +LG +SL
Sbjct: 4249 PNGKVDRRALPAPDLQQELSNYVMPNTEVEKIIAGIWQNTLEVEKVGIYNNFFELGGHSL 4308

Query: 74   LAVRLHKELDAVFPGLFAISDVFSYPTVHDMAAFLERK 111
            L +R++++L   F    +I D+F+YPT+H ++ +L  K
Sbjct: 4309 LLIRINQQLQEKFGLEVSIVDMFNYPTIHRLSQYLSTK 4346


>ref|ZP_00110269.1| COG1020: Non-ribosomal peptide synthetase modules and related
            proteins [Nostoc punctiforme]
          Length = 1421

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 20   PAGKPDRTEVV--------IKDANQLQMTRSHKEIVQILARVLDLQELSIFANFEDLGWN 71
            P GK DR  +         + DA  +  T   + I  I  + L+++++ I  NF +LG +
Sbjct: 1280 PNGKLDRRSLPAPETIRPNLSDAYVMPQTEMEQTIATIWQKALNIEKIGIHDNFFELGGH 1339

Query: 72   SLLAVRLHKELDAVFPGLFAISDVFSYPTVHDMA 105
            SLL V++H +L  +F    ++ D+F YPT+  +A
Sbjct: 1340 SLLMVKVHSKLREIFQTDLSMIDMFRYPTISSLA 1373


>ref|ZP_00110266.1| COG1020: Non-ribosomal peptide synthetase modules and related
            proteins [Nostoc punctiforme]
          Length = 1075

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 59/102 (57%), Gaps = 8/102 (7%)

Query: 20   PAGKPDRTEVVIKDANQLQMTRSH--------KEIVQILARVLDLQELSIFANFEDLGWN 71
            P GK +R E+   + ++ ++  ++        + I  I  ++L ++++ I+ NF DLG +
Sbjct: 948  PNGKVNRRELPESNGDRPELAATYEPPQTEIEQTIANIWQQMLHVEKVGIYDNFFDLGGH 1007

Query: 72   SLLAVRLHKELDAVFPGLFAISDVFSYPTVHDMAAFLERKRT 113
            SLL V++H +L  +     ++ ++F YPT++ +A +L +K T
Sbjct: 1008 SLLLVQIHAKLRELLHTDISVINLFEYPTINSLAKYLIQKPT 1049


>ref|ZP_00124542.1| COG1020: Non-ribosomal peptide synthetase modules and related
            proteins [Pseudomonas syringae pv. syringae B728a]
          Length = 4190

 Score = 51.6 bits (122), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 22   GKPDRTEVVIKDANQLQMTRSHKEIVQILARVLDLQELSIFANFEDLGWNSLLAVRLHKE 81
            G P      ++ A +    R H  +  I   VLD QE+    NF DLG +SL  V   K 
Sbjct: 2056 GTPATLPAAVRPAGK----RLHNTVRTIWQEVLDCQEIDSDDNFFDLGGHSLRIVETQKR 2111

Query: 82   LDAVFPGLFAISDVFSYPTVHDMAAFLER 110
            L  +     A++D+F YPT+  + A LER
Sbjct: 2112 LSELLQAPVAMTDLFEYPTLRGLVAHLER 2140


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 191,392,596
Number of extensions: 6634039
Number of successful extensions: 22316
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 22371
Number of HSP's successfully gapped: 10
Length of query: 152
Length of database: 757,237,578
Length adjustment: 111
Effective length of query: 41
Effective length of database: 455,861,589
Effective search space: 18690325149
Effective search space used: 18690325149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)